Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00417 ATGGCGAGGAGAGGAACTGGATCTACGGGAAAGAGCATAGAGCTTCTTGCTAACCATTTTAGAGTTGATATGGGGAGGAACAAAGGCTACTTCTTCCATTATGATGTTGCCTTGCGTAATGAAGATGGGAAATCAGTTCAAGCCAAGGGCATAGGGAGAAAAGTCCTAGATGAGGTTTGGAGAACATGTACTGAACTGGCAGAGTTTAGTTTTGCATATGACGGTGACCAAAGTTTATTCACTCTTCATCCTCTACCATGTGAGAAGCAACAATATACTGTTGAGTTAAAGCAAACTTTATCAAGGAGGGTTGGAAGCCCCGATAAGCGTCTTAATGGAGGAAATATAAAAATTCACAATTCGGATATCAACTACGAGACCACAATTCCGTTGCGAGCTATTGAGAATACAATGGATGATCAGGCTTCTGGAAACTCTTCGGAAGCACATGATGTTCCAAACAACATTCAGAGACAGCATGCTACAACACTATCACGATCTCGGTTGAAAGTTATCACTGTGGATATCAACTATGTAGCCAAAATTCCATTGCAGGAAATTGCAAATGCATTGAGTGGTCAGAATTCTGGGAAGTTTCAAGAAGCACTGAGGGTTCTAAACATGGTGCTAAGACAGCATGATGCAGAAAGGGGATGCCTCTTTGTTCGCCATTCCTTCTTTCAAAACAATGAGATAAATTGTATGGATATTGGTGGTGGTGTGCTAGCCTGCGGTGGTTTCCGCTCGAGCTTTCGTTCCACACAACGAGGATTATCTCTCAACGTTGATGTGTCGAATACAATGATTGTAAAGCCTGGACCTGTGGTGGACTTCCTTCTCCAGAATCAGAATGTTGGGAACATTAAAAACATTAACTGGACAAAGGCAAAAAGAATGCTTAAGAACCTAAGAATCAAGGTTAATGGTGTTGAATACAAAATCACTGGACTGAGTGACAAAACCTGCAGGAATCAGAAATTTCTCTTGAAGCAAAAGGGTGAAGAAAAGGAGAATGAAATCACAGTTTATGACTACTTTACAAACAATAAAATGATTGGCCTGCATAGTTCAGCTGATATGCCGTGCATCAATGTTGACAAACCACAACGCCCGTGTTACTTTCCAATAGAGCTGTGTGAGTTGGTACCGTTGCAGCGGTACACCAAGGCACTGACAAATTTGCAAAGGGCTCAGCTAGTGGAAAAGACAAGGCAAAGTCCCAAAGACAGGAAAGCTGAGGTTGAAAAATCCTTAAGAAGCAACGAATATGATAACGAATTAATGCTTCGCTCTCTTGAGATTAACATTGATCATAACATAACAAGACTTGAGGGTCGTGTATTGCAACCTCCAGAGGCAAGTTTACCTATATTATATGAATTTCTTATAGTTGGACAACAGAGATGCATCACTCCCCTCCATGGGCGCTGGAATTTTATTGATAAGCAACTATTTGCCCCTGTGACAATTGATAAATGGGCCGTTGTAAGCTTTTCAAGTGAGTGCGACACAACACTGTTGATAGAAAACATTGACAATATTAGTGCTGCTCTAGGAATGAACATAAAGAATTTACTACACGGGAAGGTAATTGAAGAGAATTCTAGATTTATAAATCAACCAGCACATGTGAGGATAGAACAAATGCATAAAAAGTTGGACAAGACTCTACCAGGAAAACCTAGTTTTCTGTTGTGTATTCTTCCAACAAAGAATTCTGATATTTACGGTCCGTGGAAAAAGAAATTTTCTATTGATGGCGGGATCGTAACACAATGTATTAGTGCACAACAAAAATTTGATCATCAGTACATTACTAATGTACTCTTGAAAATCAACCTGAAGTTTGGCGGGGTGAATACCAATCTGTCAATGGAGCATGAGAAGAAAATTCCTATTGTTTCTGCTAAACCCACCCTAATTCTTGGTATGCATGTTTCTCATGGATCTCCTGTTGGATTAAATGTGCCCTCCATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTACGCGTTATAGAGCTGCTTTCCGTGTACAGTCAGCAAAAAATCAGTTGATTCAATCTTTGTTTATGCCTGATGAGGCTGATCATCCTTCAGAGGACAAGGGTATCATCAGGGAGCTACTGTTGGAATTTTTCGAAAGTTCAAAGAGTATAAAGCCTCAACAAATTATCATTTTCAGGGATGGAGTGAGCGAATCACAGTTCAAACGAGTACTAAATGATGAGTTAAATCAAATAATACAGGCATGCAAATTACTTGATGGAGACTGGGACCCAAAGTTCACTTTGATTATAGCCCAAAAGAATCATCATACTAGGTTCTTCAACGCCAATGATGAAGATTATGATGTTCCAGTTGGAACCGTAATTGACAGCACTGTCTGTGACCCAAAAAACAATGACTTCTACTTGTGTGCTCAAGCTAGGGAGAAGATCAAAGAAACGACCCGCCAACATGGAACAACTCGACCTGTTCACTACCATGTTTTACACGATGAAATCGGGTTCTCAACTGATGAACTGCAGGAACTAGTGCATTCTCTATCTTATATGTATCAAAAGAGCACAGCTGCTGTATCGTTAGGATCCACTTCTGTGAGAGTTGCTCCCCTTTGTTATGCCCGCATGGCGGCTAGACAGGTGACAAAATTTGTGAAGTTTGATAAAGAATGTAAGGCTTCTGGCAACCATGGTGGAGGCACATCTTCTGCTGCACCTCCATTATCAATTCTTCCCGAGCAACTCATGGAGAGCATGTACTTATGTTAA 2778 0.4075 MARRGTGSTGKSIELLANHFRVDMGRNKGYFFHYDVALRNEDGKSVQAKGIGRKVLDEVWRTCTELAEFSFAYDGDQSLFTLHPLPCEKQQYTVELKQTLSRRVGSPDKRLNGGNIKIHNSDINYETTIPLRAIENTMDDQASGNSSEAHDVPNNIQRQHATTLSRSRLKVITVDINYVAKIPLQEIANALSGQNSGKFQEALRVLNMVLRQHDAERGCLFVRHSFFQNNEINCMDIGGGVLACGGFRSSFRSTQRGLSLNVDVSNTMIVKPGPVVDFLLQNQNVGNIKNINWTKAKRMLKNLRIKVNGVEYKITGLSDKTCRNQKFLLKQKGEEKENEITVYDYFTNNKMIGLHSSADMPCINVDKPQRPCYFPIELCELVPLQRYTKALTNLQRAQLVEKTRQSPKDRKAEVEKSLRSNEYDNELMLRSLEINIDHNITRLEGRVLQPPEASLPILYEFLIVGQQRCITPLHGRWNFIDKQLFAPVTIDKWAVVSFSSECDTTLLIENIDNISAALGMNIKNLLHGKVIEENSRFINQPAHVRIEQMHKKLDKTLPGKPSFLLCILPTKNSDIYGPWKKKFSIDGGIVTQCISAQQKFDHQYITNVLLKINLKFGGVNTNLSMEHEKKIPIVSAKPTLILGMHVSHGSPVGLNVPSIAAVVSSRCWPQITRYRAAFRVQSAKNQLIQSLFMPDEADHPSEDKGIIRELLLEFFESSKSIKPQQIIIFRDGVSESQFKRVLNDELNQIIQACKLLDGDWDPKFTLIIAQKNHHTRFFNANDEDYDVPVGTVIDSTVCDPKNNDFYLCAQAREKIKETTRQHGTTRPVHYHVLHDEIGFSTDELQELVHSLSYMYQKSTAAVSLGSTSVRVAPLCYARMAARQVTKFVKFDKECKASGNHGGGTSSAAPPLSILPEQLMESMYLC 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00417 925 Pfam Argonaute linker 1 domain 222 270 IPR014811 -
Spst6g00417 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 891 - -
Spst6g00417 925 ProSiteProfiles Piwi domain profile. 563 889 IPR003165 GO:0003676
Spst6g00417 925 Gene3D - 448 624 - -
Spst6g00417 925 Gene3D - 630 924 IPR036397 GO:0003676
Spst6g00417 925 SUPERFAMILY Ribonuclease H-like 547 885 IPR012337 -
Spst6g00417 925 Gene3D paz domain 266 387 - -
Spst6g00417 925 SMART Piwi_a_2 563 889 IPR003165 GO:0003676
Spst6g00417 925 ProSiteProfiles PAZ domain profile. 312 383 IPR003100 GO:0005515
Spst6g00417 925 CDD PAZ_argonaute_like 272 382 - -
Spst6g00417 925 Pfam PAZ domain 276 399 IPR003100 GO:0005515
Spst6g00417 925 Pfam N-terminal domain of argonaute 11 210 IPR032474 -
Spst6g00417 925 SUPERFAMILY PAZ domain 267 423 IPR036085 GO:0005515
Spst6g00417 925 SMART DUF1785_2 220 272 IPR014811 -
Spst6g00417 925 FunFam Protein argonaute 7 267 387 - -
Spst6g00417 925 Pfam Piwi domain 564 888 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00417 Spst-Chr6 3927509 3933504 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00417 168 925 Eukaryotic Initiation Factors Gene Family AT1G48410 32.711 7.56e-121 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00417 K11593 - gmx:100812218 1012.68