Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00409 ATGGGGTGTGTGATTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGAGTTTGAGTGGTGAGAGTAAGAGGAAGGTTGATGGAGTGTCAGGGAGCAAGGGTGGGGTTGTGGTAGAGGTTCAGAATGGTGGGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGGTGGTGGTGAAGGGGTACAACGGCCTCGAGGCGAAAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCTGCCGAAGCAGTTGCGGGGGGAGCAGGTTGCTGCTGGATGGCCGCCGTGGCTCACTGCTGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATTGATAAGATCGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACGGGGAAAATCGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCAAGAGAGATTCTTATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTATATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACAGAGGCTCAGGTAAAATGTTACATGCATCAGCTGCTCTCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCAGACTTTGGACTGGCTTCTATTTTTGATCCAAACCATAAACATCCTATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGTTGCTCCTTGGTGCGACGGATTATAGTGTGGGTGTAGACCTATGGAGTGCTGGATGTATTTTGGGAGAGTTATTGGCTGGGAAGCCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCCGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCACGAGAGCCATACAAGAGGCGCATAAGAGAGACATTTAAAGATTTTTCACCTTCTGCTCTACCCCTCATTGATACACTTCTCGCAATTGATCCTGTAGAACGGGAAACTGCCTCAGATGCTTTGAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGACTAAGAGCTACAGGCAAAGCTCAGGTTGATGGTCCAAAGAAGCATCGTACTCGTGATCGTGCTACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCGAATATTGATAGAAGACGACTAATTACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATCAAGATGGACAACTTGGTTTTCCTCTGGGTTCTTCACATCATATTGATCCAGATACTGTTCCCGCTGATGTCTCTTTTTCATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCTGCTGACATTGGAATGCCAAAGCGGAAGAAACACACTGATGCTTTGGATTTATCAAAACCACAGAAGGATGCTCTCAAGGACAAGGTTAAAGGAAAGAAAATCATAGCTTAG 1743 0.455 MGCVISREVSKGIISEVKEEKSLSGESKRKVDGVSGSKGGVVVEVQNGGEKEKEKEKEKGGGEGVQRPRGERRRSKANPRLSNLPKQLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEAQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRETFKDFSPSALPLIDTLLAIDPVERETASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRATGKAQVDGPKKHRTRDRATKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPADVSFSSTSYTYSKEPFQAWSGPIGNAADIGMPKRKKHTDALDLSKPQKDALKDKVKGKKIIA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00409 580 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00409 580 MobiDBLite consensus disorder prediction 47 78 - -
Spst6g00409 580 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Spst6g00409 580 MobiDBLite consensus disorder prediction 548 580 - -
Spst6g00409 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Spst6g00409 580 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00409 580 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00409 580 MobiDBLite consensus disorder prediction 533 580 - -
Spst6g00409 580 SUPERFAMILY Protein kinase-like (PK-like) 115 411 IPR011009 -
Spst6g00409 580 PANTHER CELL DIVISION PROTEIN KINASE 118 408 - -
Spst6g00409 580 CDD STKc_CDK9_like 120 404 - -
Spst6g00409 580 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Spst6g00409 580 MobiDBLite consensus disorder prediction 16 90 - -
Spst6g00409 580 FunFam probable serine/threonine-protein kinase At1g54610 107 202 - -
Spst6g00409 580 MobiDBLite consensus disorder prediction 16 33 - -
Spst6g00409 580 FunFam probable serine/threonine-protein kinase At1g54610 203 444 - -
Spst6g00409 580 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00409 Spst-Chr6 3828921 3832991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00409 112 444 Core Cell Cycle Gene Families AT5G10270 52.436 3.42e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst6g00409 Pkinase 3.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00409 K08819 - gmx:100786837 1029.62