Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00405 ATGTCGCTTACCCAGGCACTTCTAGAGCATAAAGAAAGAAGGAAGAAAAATAGTAATGCAGTAATGACTATGGTCATCAAACGGTCAAAACCTAATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAACTTTTTATGGCTATTGATCCTGATACCAAGCAACTTGTGTACTATGAGGATAGGGCAGACCAATCAAGAGGGATACTACATCTTGACAAGTCATTGCTTGTTGATAATCCTTCGCTCTCTCTGCATCATGATAAGCAGGTTGAACTCTTATATTTTGGGGTCATGTCTCTGGCCTGCGACAACCTTATTAACTTTCTTGAGCTCATTAGGTTAGCAATATCTTATCTGCAGGATTGTTACATTGACATCTGCTCGCCAGAAGTACTTAGCCTATTTACAGACAATTTTGACTACCAACATCTCCGGCGTCATTTTGTTAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATTCACTCAGACTATGCTGCAAGGGTTGATAATTTCCGAAGTTATGACACTGTCAGCAAGGATATAATTCATCGATGGACATATCCACTGGTGCCAGATGTAATGAATTTTGGCAAAACAGCTACTAAACTTGAACGACAAGGAATGTACCGTGCTTTGGAAATATCACAATCGCAGTCTGCAGTTATTGGCCCTTTCACGGTCATAGGATCTGGCACCAAAATTGGGAATAACACTAAAATTTCAAATTCTGTTATTGGTGAAGGATGTAAAATTGGATCAAATGTTATCATAGAGGGATGCTATATATGGGATAACATCAGCATAGAAGATGGCTGTAAACTCCAGCATGCAATTGTATGTGATGGGGTGATTATAAAGTCAGGGGCTGTTCTGGAACCTGGTGTTATTTTGTCTTTTAAGGTTGTAGTTGGGCCAGAGTTTATTGTTCCTCCATATTCAAAGGTATCTCTACTTCAGCAGCCAATTGAGGAGGACAGTGACGAGGAGCTTGAATATGCTGATAGTACTAGTGTCATGGGCAGCCAGGTGGATAAATCAGATGAGATTACTTCCAAAGTATTGGAGACACATTTTACTCCTGCGTCGGAGCTTGGTATGGGTGGGGCGGGTCATGTTTGGTCAACATGTGAAAGTGGCCATGAAGAAGAGTGGAGGCATTCAGTGGCGCCTATTCCTAAAGATAAAATTATGGAGGCAATTAAAACTATGGAAGATGATCTGGGGTTTATTCATGATGATAGTTTTCTCCCACCTTCTGGTGAGCTGATACCTAATTCTAATGATTCAGATGATGATGATCATGAAGATTCTAGGGATGACTCTTATTACTTTGAGAAAGAGGTTGAAGCAACTTTTCTCAGGGCTGTGCATGAAAACATACAGGAAAGCCATTTGATCTTAGAAATCAATTCTTTGAAGTTGTCGTACAATAAACTAACTTCTGATTGTGCCGGAGCTTTATTTTATGCCATGATGAAGTGTGCTTTAGACATCCCCCATAGTTCAGCTGATGGTTTGCTTCAAAATGTTCAGGTTGTATTTACAAAGTGGAAAAAGGCTTTGACATCCTATCTGAATGACAAAGATGAGCAGATTGAAGTAATACTAAAATTTGAGGAAATGTGTTTGGAATCGGCTAAGGAGTTTGCTCCATTGTTCACAACGATTTTGCACCAATTGTATAATGACGATGTTGTAGAAGAAAATGCTATTTTGAGTTGGGAAGATGAGAAAAAAGATGCTGATGAGGCAGATAAAGTTTTTGTTAAGCAGGCCCAAAAATTGATTCAATGGACTCTAATGGATGAGTAA 1836 0.3932 MSLTQALLEHKERRKKNSNAVMTMVIKRSKPNPAIHQSRLGTDELFMAIDPDTKQLVYYEDRADQSRGILHLDKSLLVDNPSLSLHHDKQVELLYFGVMSLACDNLINFLELIRLAISYLQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSDYAARVDNFRSYDTVSKDIIHRWTYPLVPDVMNFGKTATKLERQGMYRALEISQSQSAVIGPFTVIGSGTKIGNNTKISNSVIGEGCKIGSNVIIEGCYIWDNISIEDGCKLQHAIVCDGVIIKSGAVLEPGVILSFKVVVGPEFIVPPYSKVSLLQQPIEEDSDEELEYADSTSVMGSQVDKSDEITSKVLETHFTPASELGMGGAGHVWSTCESGHEEEWRHSVAPIPKDKIMEAIKTMEDDLGFIHDDSFLPPSGELIPNSNDSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLSYNKLTSDCAGALFYAMMKCALDIPHSSADGLLQNVQVVFTKWKKALTSYLNDKDEQIEVILKFEEMCLESAKEFAPLFTTILHQLYNDDVVEENAILSWEDEKKDADEADKVFVKQAQKLIQWTLMDE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00405 611 SUPERFAMILY ARM repeat 452 606 IPR016024 -
Spst6g00405 611 CDD W2_eIF2B_epsilon 452 606 IPR044123 GO:0005085|GO:0031369
Spst6g00405 611 Pfam eIF4-gamma/eIF5/eIF2-epsilon 538 606 IPR003307 GO:0005515
Spst6g00405 611 MobiDBLite consensus disorder prediction 428 447 - -
Spst6g00405 611 SUPERFAMILY Trimeric LpxA-like enzymes 161 323 IPR011004 -
Spst6g00405 611 CDD LbH_eIF2B_epsilon 235 313 - -
Spst6g00405 611 Gene3D - 439 611 - -
Spst6g00405 611 ProSiteProfiles W2 domain profile. 446 611 IPR003307 GO:0005515
Spst6g00405 611 FunFam Trimeric LpxA-like enzyme 210 343 - -
Spst6g00405 611 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 1 606 - -
Spst6g00405 611 Gene3D Hexapeptide repeat proteins 205 324 - -
Spst6g00405 611 SMART 542_3 526 611 IPR003307 GO:0005515
Spst6g00405 611 FunFam Translation initiation factor eIF-2B epsilon subunit 442 611 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00405 1 606 Eukaryotic Initiation Factors Gene Family AT2G34970 58.320 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00405 K03240 - gmx:100784894 1020.76