Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00387 ATGGTCCCAATTGACCATGTTTCTGATGATGAACACAACAAAACAGGAATTGTGTTTTCTAGCCCTGCTTCTGCCGAAGACTCGGGAGAAATCGTTTTGGAGAGAGAGAAAAGTGTGGTAACTCTGAAAGAACTCTTGGAAGGATGCATTAGAGACACTGACAATTCTCATCAACCACCTCAATTGGCTGGTAGTAATCCAAGCTCAAGGACGCGGTTTCACTGGAGAAAGTTTTTTAAACCATGCAAAAATATAATTGGAAGAGGTGGCTATGCTCATGTTTACAAGGGTAGGCTCCAAGATGGGCAACTGATAGCAGTCAAGCAACTGGATAGAGGGACTGTAGAAGACAGGATATCAAATCTTCTATCTGAACTAGGCATTCTTGCTCATGTTGACCATCCCAATACTGCCATGCTTATTGGATTTGGAGTAGAGGGGGGAATGCATCTTGTCTTCCAATTATCTCCATTAGGAAATTTAGGATCTCTTCTTCATGCAGATGGCCTCCTCTATCTTCATGAGATTTGTCAGAGGCGAATCATTCATCGAGATCTTAAATCAGAAAATATTCTACTCACAGAGAATTATGAGCCACAGATTTGTGATTTTGGGCTCTCAAAGTGGCTACCAGAACCGTGTACTCAGCATAAAGTAACAAAATTTGAAGGCACAATTGGGTATTGTGCTCCGGAGTACTTGATGCATGGCATAGTAAACGAGAAGACTGATATTTATTCCTTTGGGGTCTTACTTTTGGAGATTATATCTGGGCGTCATGCTTTGGATCATTTGCGAGAAAGTATTGTGCTATGGGCAAAGCCTTTATATATAGCTAATAATACTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGATCGAGAAGAAATGGAACGTGTTGTTTTGACTGCATCTATATGTGTTGAGCAGTTTCCTATTTTACGCCCCAGCATGAGTCAGATTGCAGTACTGCTACGAGGTGATGACTTTGTATTGGAACATACTGAGAGGAGTAAAAAGATGCTCAACAATACGACTGAAGAAGCTATTTAA 1059 0.4089 MVPIDHVSDDEHNKTGIVFSSPASAEDSGEIVLEREKSVVTLKELLEGCIRDTDNSHQPPQLAGSNPSSRTRFHWRKFFKPCKNIIGRGGYAHVYKGRLQDGQLIAVKQLDRGTVEDRISNLLSELGILAHVDHPNTAMLIGFGVEGGMHLVFQLSPLGNLGSLLHADGLLYLHEICQRRIIHRDLKSENILLTENYEPQICDFGLSKWLPEPCTQHKVTKFEGTIGYCAPEYLMHGIVNEKTDIYSFGVLLLEIISGRHALDHLRESIVLWAKPLYIANNTKDLVDPSLGDDYDREEMERVVLTASICVEQFPILRPSMSQIAVLLRGDDFVLEHTERSKKMLNNTTEEAI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00387 352 SMART serkin_6 80 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00387 352 PANTHER OS08G0249100 PROTEIN 83 345 IPR046958 -
Spst6g00387 352 Gene3D Transferase(Phosphotransferase) domain 1 159 348 - -
Spst6g00387 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Spst6g00387 352 MobiDBLite consensus disorder prediction 1 21 - -
Spst6g00387 352 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Spst6g00387 352 Gene3D Phosphorylase Kinase; domain 1 76 154 - -
Spst6g00387 352 Pfam Protein kinase domain 84 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00387 352 SUPERFAMILY Protein kinase-like (PK-like) 83 329 IPR011009 -
Spst6g00387 352 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 161 341 - -
Spst6g00387 352 ProSiteProfiles Protein kinase domain profile. 80 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00387 Spst-Chr6 3669896 3673624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00387 83 349 Receptor kinase-like Gene Family AT1G60800 38.435 8.74e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst6g00387 Pkinase 1.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00387 - - ccaj:109789909 447.588