LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g00383	ATGGTTTTTGTCGTTCTTGTTGTTGTGCAGTCGAGAAGAAAGGTTAGAGAGCCAAAGGAAGAAAATGTGACACTTGGTCCAGCTGTTAGAGACGGTGAACATGTCTTTGGCGTCGCTCGCATTTTTGCCTCCTTCAATGATACCTTCATCCATGTCACTGATTTGTCTGGAAGGGAAACACTTGTCCGCATCACCGGTGGGATGAAGGTTAAAGCTGATAGAGATGAATCATCTCCCTATGCTGCTATGCTTGCAGCACAGGATGTTGCTGCTAGATGCAAGGAACTGGGCATAACTGCTCTTCATATCAAGCTCCGCGCCACTGGTGGAAACAAGACAAAGACACCTGGTCCAGGTGCTCAATCAGCTCTACGAGCACTAGCCCGTTCCGGAATGAAAATTGGTCGTATAGAGGATGTGACACCCATCCCTTCGGATAGCACTCGCAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA	480	0.4792	MVFVVLVVVQSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g00383	159	Pfam	Ribosomal protein S11	37	155	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Spst6g00383	159	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	12	152	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Spst6g00383	159	Hamap	30S ribosomal protein S11 [rpsK].	12	156	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Spst6g00383	159	FunFam	40S ribosomal protein S14	10	159	-	-
	Spst6g00383	159	ProSitePatterns	Ribosomal protein S11 signature.	124	146	IPR018102	-
	Spst6g00383	159	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	8	156	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Spst6g00383	159	MobiDBLite	consensus disorder prediction	139	159	-	-
	Spst6g00383	159	SUPERFAMILY	Translational machinery components	32	157	-	-
	Spst6g00383	159	Gene3D	Ribosomal protein S11	10	159	IPR036967	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g00383	Spst-Chr6	3647850	3649387	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g00383	11	148	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	90.580	1.58e-91	261

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g00383	K02955		-	gmx:100786325	266.159