Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00366 ATGGGTTGGTATAACGTTGTTGTGGAGGATACCTTTCAGGACCAGCTTCCTCTCTATTTCACGTGCAAAGCAGTGTCCATTTTGTGTCTTACTTCACCTTCACCTCAAACTCAAGGGCCTTTAAAAGCTCAAAAGCACTCCTCAATAGCATGCAACTTGGCATTTTCCATCTCCATCTTCACCTTGTTCTGGTTTGAGGGCACCCACATCAAAATTTTGTGCATGTGTTTGTCTGAGGGAGAGAGAGGCATGGCACTTGAAGCAGTAGTGTATCCCCAACCCCAAGACCCGTTTGGCTATGCAATCAAAGACCCTTACAACTACAGCAACTTGTTAGAAGGTGCTGCAGGCAACTGGGGCTATGGAGATTTCACCCTTGAAAAGGAAGACCAGGCTTGTGTCACTTTTCTGGACAACCAAACAGAGAATTATCCCTATGGAGATTGGAACTCTTCCCCTCCATCCTTGTTGCCTCACAACATGAATGCATCAAATCCTCCTTCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGAACCAAAAGCAGAAAGAATAAGGAAGAGATCGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGTACTTCAATCACACATTTCCTCCACCAAAACATGCTTCTGCTTTTCACTTTCTTCAAGGGGAAATCTACAATTTATCTCTGATTCACTTCATGCTGGTGATCAAGCATCTATTATTGGGGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAAAAAGAGGGGAAACCTGATGTACCCTTTTCTGAGTTCTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGTGAGCAAAAGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGACAATAGTCTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACCGAGGAAATTGTCCTGTATTCTCTCAATGTCAAGGTGGAAGAAGATTGCAAGCTGGGATCAGTGGATGAGATAGCCGCAGCTGTATACCAAATGCTGGACAGGATCCAACAAGAATCAATGGTGAATTAA 1296 0.4483 MGWYNVVVEDTFQDQLPLYFTCKAVSILCLTSPSPQTQGPLKAQKHSSIACNLAFSISIFTLFWFEGTHIKILCMCLSEGERGMALEAVVYPQPQDPFGYAIKDPYNYSNLLEGAAGNWGYGDFTLEKEDQACVTFLDNQTENYPYGDWNSSPPSLLPHNMNASNPPSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRVLQSHISSTKTCFCFSLSSRGNLQFISDSLHAGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTSASGGCDNSAAMSEQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLTIVSSLHGMRLTILHLNVTTTEEIVLYSLNVKVEEDCKLGSVDEIAAAVYQMLDRIQQESMVN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00366 431 PANTHER MAX DIMERIZATION, MAD 151 427 - -
Spst6g00366 431 MobiDBLite consensus disorder prediction 145 184 - -
Spst6g00366 431 Pfam Helix-loop-helix DNA-binding domain 205 241 IPR011598 GO:0046983
Spst6g00366 431 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 287 IPR011598 GO:0046983
Spst6g00366 431 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 300 IPR036638 GO:0046983
Spst6g00366 431 MobiDBLite consensus disorder prediction 145 203 - -
Spst6g00366 431 Gene3D - 188 302 IPR036638 GO:0046983
Spst6g00366 431 SMART finulus 210 293 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00366 Spst-Chr6 3480552 3484794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00366 84 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 42.898 4.32e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g00366 HLH 5.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00366 - - gmx:100777413 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00366 6 3480552 3484794 Spst6g00366 6 3480552 3484794 ECH
Spst6g00366 6 3480552 3484794 Spst10g00085 10 809188 810402 PCT