Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00365 ATGCACACCCTATATGACCATCGACAACACCGTCACACATTTTCTCTCTTAAATAACACAAACAACACTACACAATCTTTGTCTCACTCTTCATTTCACAAAATGAAGAAACACCAACACGCAACCCTGTTCCTCCTCTTCCTCGCGTCGATTCCAATCGCCGTCGCGCAGCCCCAGCCCAATGACTACATCGACCCAAAACTCACCCGGTTCAACCCCTCTCTCGCCGTGATCATCATCATACTAGTGGCGGCGCTTTTTGTCATGGCCATTTTCTCCATCTACGTAAGACGCTGCGCCGATACGCCTCCCAACAGCGTTAGGCCTCTCACGACCGCACGCTCCAGGAGAGCGGCGCGTGGCCTTGATCCCGCCGTCATCCAAACCTTCCCCATCCTCGAATACTCCGAGGTTAAGATCCACAAGGTCGGAAAAGAAACCTTGGAATGCGCGGTGTGTTTGTGCGAATTTGACGACGCCGAAACGCTGCGTCTCATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTGCCAACAGAGTCCCAGGATTCTGACGCCAATAACGCTAACGGTGTTGGTGATGGTGTTGTTCCCGTTCCGTTAACCCCAGACGTTGAAGCCCAAAACGACGTCGTGGAAGCCGCGTCAGAGCAGCAAAACGCGTACTCTGACTGTGTCTTAACCGAACCGGAAGTTGTTCCTCTGGACAAAACGCTGAACCGGAACCGCACGCGCGGATCGCGGTCGAACCGACAGCGCCGGTTCTCGAAGTCGCACTCGACCGGACACTCGATCGTCCAACCAGGCGAAAACACTGACCGGTTCACTCTGAGACTCCCTTTGGAGGTTCGCAAGCAACTAATAAACCGGCAATTGCATCGTGCGAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCAGGGTTACCGAACCGGAGGAGAAGGGAGTAGTAGGGGGAAATATTTGAGGCGGTTGGACCGGAGTTTAAAATCGGACCGGTGGATTTTCTCCAGAGCTGCTCCGTTTTTCGCGAGGGCGCTATCTTTAAGGTCCCCGAGGGTGCGTAATAACGACGTTGAAGGAACGTCGTCGTCTTCCACAGCACCGATCATGCCGCCTACGGCCGTTGACTCTGCTAGGCCACCGGTTTAA 1215 0.5473 MHTLYDHRQHRHTFSLLNNTNNTTQSLSHSSFHKMKKHQHATLFLLFLASIPIAVAQPQPNDYIDPKLTRFNPSLAVIIIILVAALFVMAIFSIYVRRCADTPPNSVRPLTTARSRRAARGLDPAVIQTFPILEYSEVKIHKVGKETLECAVCLCEFDDAETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESQDSDANNANGVGDGVVPVPLTPDVEAQNDVVEAASEQQNAYSDCVLTEPEVVPLDKTLNRNRTRGSRSNRQRRFSKSHSTGHSIVQPGENTDRFTLRLPLEVRKQLINRQLHRASSLIVLPREGSSRQGYRTGGEGSSRGKYLRRLDRSLKSDRWIFSRAAPFFARALSLRSPRVRNNDVEGTSSSSTAPIMPPTAVDSARPPV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00365 404 MobiDBLite consensus disorder prediction 376 404 - -
Spst6g00365 404 MobiDBLite consensus disorder prediction 376 393 - -
Spst6g00365 404 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Spst6g00365 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 50 279 - -
Spst6g00365 404 FunFam E3 ubiquitin-protein ligase ATL6 110 198 - -
Spst6g00365 404 SUPERFAMILY RING/U-box 144 198 - -
Spst6g00365 404 CDD RING-H2_EL5-like 149 192 - -
Spst6g00365 404 SMART ring_2 150 191 IPR001841 -
Spst6g00365 404 Pfam Ring finger domain 149 192 IPR001841 -
Spst6g00365 404 MobiDBLite consensus disorder prediction 255 290 - -
Spst6g00365 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 198 IPR013083 -
Spst6g00365 404 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00365 Spst-Chr6 3467804 3469018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00365 43 389 Rapid Response to Elicitors AT3G05200 43.223 2.38e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00365 K10664 - gmx:100781706 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00365 6 3467804 3469018 Spst6g00365 6 3467804 3469018 ECH
Spst6g00365 6 3467804 3469018 Spst10g00082 10 781076 782164 PCT