Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00360 ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGGTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCTGGGTCAGTTGTGACATCAGTTGGGGCCATTCCATCCACTGGTCAACCTGCTGGAGCGCAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCATCAGCTTCAGCAACAACTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGCTCTTGGAATCACACTGAAGAGAATAAAAGGCGAACACTTCAAAAAAATGATATTGCTGCAGCAATCACAAGAACTGACATCTTTGATTTCTTGGTAGACATAGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCCGTTGGAGGTCCCGCTGATGCACTTCCATACTGCTACATGCCGCCTCAGCACGCCCCTCAAGTTGGAACTACTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAACAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACATTCGCAGTTCTTTTGGTCTCATATTGGCTACATTTCCTGGCTTGCAGATAACCAGGCACCAGAATCAGTTGTGAATGTCAAACTGAATGATTGGGGAAGTCCATAG 867 0.4625 MDHQGHGQNPSMGVVGSGGQLTYGSNPYQQGQITGPPGSVVTSVGAIPSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTTGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQHSQFFWSHIGYISWLADNQAPESVVNVKLNDWGSP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00360 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 196 - -
Spst6g00360 288 MobiDBLite consensus disorder prediction 1 21 - -
Spst6g00360 288 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Spst6g00360 288 SUPERFAMILY Histone-fold 73 173 IPR009072 GO:0046982
Spst6g00360 288 Pfam Core histone H2A/H2B/H3/H4 69 164 IPR007125 GO:0003677
Spst6g00360 288 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00360 Spst-Chr6 3442079 3443292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00360 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.887 2.07e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst6g00360 CBFD_NFYB_HMF 6.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00360 K08066 - gmx:100527803 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00360 6 3442079 3443292 Spst10g00078 10 746212 746997 ECH
Spst6g00360 6 3442079 3443292 Spst6g00360 6 3442079 3443292 ECH
Spst6g00360 6 3442079 3443292 Spst10g00078 10 746212 746997 PCT