Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00346 ATGTGTTCACTTGACAGAGAGATTGCTAACTCTACACAATTCAGTTCTGTTGTTGCCGACGCAACGTCTCTCGCATACGCATCGCTCTTCACTCTCTCAGTCTCACAGAGAACGCGAGAGAAATCGCAAATGCAAGACATTTTCGGATCAGTTCGCCGATCACTAGTATTCCGCGGTTCGCCGGAGGGCGACGAGACATCGCTCGGAGTTGGAGGAAGCCTCGTGGATAAGATCAGTTATTGTATCCGAAGTTCAAGAGTCTTCTCCAAACCCTCCCCGCCTTCGCCGTCTATCCCTAAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTATGTTGGAATGAATCTCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATCGCGGCGAGCAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCTTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCCATATCATCTCTATTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTTATAAGAACTTACACGAAGCAGCTACTACTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCTTCGAAGCAGGTCGTTGAACTGGCAACCATTTCCGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGATATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACCGGAAAACCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACCAAGTCTCATCCGCCAATTCCTGATCATCTCTCAGTTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTTTTGAGGTCCTCGGCATCAGAACTACTGCAGCATCCCTTTGTAACTGGCGAACATATGAATTCTCTTCCTCCGTCATCTAATGTCACGGAAAATTTGGAAGCTTCTTCACCATCACGTGCTCCAAATGCTGAATCCTTCCTTTGCTCTTCAACCGTAAATCCTCTGAACTCGGGAAATAAACAATTATGGGGAATGAGCAATGATGATGATGATGATATGTGTGTGATTGATGACAAGGAAGAGTTCTCGTCGAGTGGTGTCAAATACGAATCACTGCTATCAACTAATATTGAGAGTTTCAACCCAATATCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTCCAGAACTGGAAAATCGAGAGGTCAATTTTGGCACAGATGAAAGTTACATGCCACCTGAGCAGTCAGGGGATGATAAGGGGCAGACAGATTTTTCCTTTCCAGGTGTCCCGTCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAAACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTCTTCCCCCAATGTCATTGACAGCACAAGTGATGATACTGCTTCTCGAAAATATTTGAAATTACCTCCTAAAAGCAGGTCACCAAATCGAGTACCAGTTAGCACTCCATCTAAAGCCGTCGATAATACTGGAAGTCCGGGAAGTAATGGCCGGTCCTCAACAACTGTTGGCCATGTAAATAGTCATGCTTCACAGGATATTCCGGCACCTCCCCTTAATGAATGGAAAGGACTGGTCGTTGACTCTCAGCAGCAGCCTATTAGCCCAAGTGTAAGCTTTTCCGAGAGACAGAGGAAGTGGAAAGAAGAGCTTGACCAAGAGCTTGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGCATGGGAGGAAAGACATCTTCACCAAAGGATCGAGCTTTACAACGGCAGAGGGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 2103 0.4579 MCSLDREIANSTQFSSVVADATSLAYASLFTLSVSQRTREKSQMQDIFGSVRRSLVFRGSPEGDETSLGVGGSLVDKISYCIRSSRVFSKPSPPSPSIPKDAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLPPSSNVTENLEASSPSRAPNAESFLCSSTVNPLNSGNKQLWGMSNDDDDDMCVIDDKEEFSSSGVKYESLLSTNIESFNPISDPSDDWGCKFDASPELENREVNFGTDESYMPPEQSGDDKGQTDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSSSPNVIDSTSDDTASRKYLKLPPKSRSPNRVPVSTPSKAVDNTGSPGSNGRSSTTVGHVNSHASQDIPAPPLNEWKGLVVDSQQQPISPSVSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALQRQRERTRFASPSK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00346 700 MobiDBLite consensus disorder prediction 376 400 - -
Spst6g00346 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Spst6g00346 700 MobiDBLite consensus disorder prediction 683 700 - -
Spst6g00346 700 SUPERFAMILY Protein kinase-like (PK-like) 107 372 IPR011009 -
Spst6g00346 700 Coils Coil 651 671 - -
Spst6g00346 700 Pfam Protein kinase domain 109 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00346 700 MobiDBLite consensus disorder prediction 373 400 - -
Spst6g00346 700 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 68 384 - -
Spst6g00346 700 MobiDBLite consensus disorder prediction 550 566 - -
Spst6g00346 700 Gene3D Transferase(Phosphotransferase) domain 1 107 402 - -
Spst6g00346 700 FunFam Mitogen-activated protein kinase kinase kinase 2 107 399 - -
Spst6g00346 700 Coils Coil 141 168 - -
Spst6g00346 700 ProSiteProfiles Protein kinase domain profile. 108 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00346 700 MobiDBLite consensus disorder prediction 649 671 - -
Spst6g00346 700 CDD STKc_MAPKKK 107 371 - -
Spst6g00346 700 MobiDBLite consensus disorder prediction 582 616 - -
Spst6g00346 700 MobiDBLite consensus disorder prediction 632 648 - -
Spst6g00346 700 FunFam Serine/threonine-protein kinase STE11 104 198 - -
Spst6g00346 700 MobiDBLite consensus disorder prediction 485 518 - -
Spst6g00346 700 SMART serkin_6 108 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00346 700 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Spst6g00346 700 MobiDBLite consensus disorder prediction 550 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00346 Spst-Chr6 3371091 3377422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00346 44 700 MAP Kinase Kinase Kinase AT1G54960 57.493 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Spst6g00346 Pkinase 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00346 K20606 - gmx:100807537 1156.35