Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00341 ATGTCAGATTCACAGTCCAATACTGAGATTTTCAGCGTTCGGATTGTCTCCATCGACTATTACATGGCACCACCATTCCCTGACACCGATATCTGTTATAGTAGCTTCCACGGTGGAAAGGTGAACGAGGTACCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCGTGCACATGCATCGAGCCCTACCCTATTTGTATGTGCCGTGTTCAGATATACCACTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGGCTGGTGCTGTTTTTGATAAAAGTTTACAGCCATATGAATCACATATTCCATTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCCACCCGATACCCGATACTTGCAAGACATTAAATATTGATAGTCAGCATAGAAAGGCAGATCCACCTGCTCATGCATGTTTAGAGTCAAAGTTGTGGATCTCTTCCATGATTCCATCTGAGTGGATGTGGTTACCCCCTAGCAAATCCAGTGCTTCATTTAATGATGAGGTTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTTTCACAAACATGCTCAGACGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAGCAACAGAAACGAACTGGGATTCATGAGGCTACCATGCTTTCCGAACCTGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCCGTTGGTCTTGACTTTGAGAAAAAAATTATTGAATTATGCAGTGAAGCTGAAACCTCTTTATTTTGTACTCCTTCTGGGCAGGAAAGGAGAGAAACAGACATAATAGGTTCGGCATCACCACCGGCTACATTATGCAAAAATGCCAAATTGCATGAGGAAGGGGGGACTGACGCAAATCTTGAAATGTTGACTATGGATGAAATCCAGTCATCTGAAATGATTGGAAGAATGGACATAAAGGCAGGTGCCAATAATGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTTGCTTATGAAACAATCTTGACTCCCTTGTTGCCCGCTGCAACAATTGACAAGGTTCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAACTGATGGTGTGCTTGAGTTGGAGTTACCAAAAGAAAAGCTTTCTTATTCCTTTGTTCACAATTGTCCTTTTAGAACTTCATCAAACAGTAAATTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCTAGTCCATGCGGTAGTTTGGCTGGAACATCTTCTCTGGCAGAGACAAACAGTGAATTCAAAAGCGCCTCTGAGTACCATGTTGTGCACAGTACTACCACATGTAAAGTTAGTAAAGAAGAAAGGAATAAAAAATGGGGGTCTTTGCCTTTTCCCATGATTGATAAGGTTAATAATGATGGTGAGGGTGCTACTTTACCTGTGACTCATCCAGATGACAATGAGATTGGAGATTCTACTCACTCAGATCACCTAAACAGAAATGAGGTTAGAATTAGTGCTTGTACACGGAACAAGGACAAAGATGTTTCAGATTCAAAAGAAGTAGATAGATCGATTAACCGTTCTCTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGAATTTGAGTCTGGAATTACTAAAAAGCTTCTTTTAGACAGGCACGAGGAACCAAATACATGCTTTTGGCAAAACCAACTGGATTTAAATACAATGCAAACTGATGAAGAGGAAATGGAAAACCAAAAGATTTGTGAATATGAAGTTAGCAATCATGCTAATTTTGTGCATGAGAAACTGCCCCTTTCAACTGGAAGTGACAGTCCTTTACAATCTAGTAGGCCAAAAGATGAATGTTTTGGTCAACATGAAATGGTAGGTATAGAGGCAAGTTCAGTGGTGAGGAACTGTATAAATGGAGGTTCTACTTTAATGCATGATGGGCCAGGTCTCCATAAGCCTGAAAAACTATATTTATTTGATTCCATAGATCAGTCCGGGGCTTGCAGGGGTGAAAACCTTAAGGTTGGTATGGCTTTGACAAAAGATGTAGCCTCCAATTCCTATATCCAAAATCCCATTTTAGACACTCGGTTTAAAACAGCTGCTGTTCATGCCGTCAGAGCTCCTGAGAGGAGTCCACAAACTGATTCTTCTGCTTCAACTAGTGTGCAGAGCTCGTTCAATGATTTTAAAGTGTTTGGCAAATATAATTGTGTGGATCAAAGTTCTCACCAAAGCTTATCAGTTGTACAAAATGATCAGATGACATCTTGTGAGAATTCTGGGAAGAAAAGTGCTACAAGTGATGTGCAAATATTGTTTAGTGAAAAAGTGGATGATCAAAAGCTGGGTGAAAATTTGTTACATGAGATTATTGGCTCCGAACCCACTGACCTAAAGGGTAATCACATGAAATTAACTGAAATAACCACAAGTAAAAACCCCCCAGCTGATAAGAATCTTAAAAGTACTTTGTGCTTGCCAACAACCTCTGATACCCATTTACATTTGGATGAGGACAGCTCTGATGAAATACCAGGGGATGATCTAGATGTCTTTCTTCCGATTTCTGCAAGGGATTCCAAGAAAGGGATGGAAACTTGCAATGAGTATACAGTTAAAACTCTTACACCTAGGGGGACAATGGGTGCCACCACTCTCTATCAAAATGACGGCTCTCACCTCTATCTATTAACACCTAATATTTTGCCTCCTTCTGTGGATACTGTGCACAAATGGCTACCTTGTAATGAGAGAGGGCATATTCCTGATCATATACATAAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGACTGATCCTCCTCTTGGGCGTAAGCTGTATCAAGACGCTGATAGAGAAAAGATGCCTTCATGCATTGAAGGACAAACTGAAAGAGTGAAAACACACCTAGATGACTCACAAGATATTTCTCAGATATCAGGCCCTGATGGAAAATCAATCTATACCCCTCTAAGTCAAATTGGATTTCAAGACCCTGCAAGTGTTGGCCGTGGACAACAACTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTCTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTGTTGAAGTTCTAGTTCTTTTACACAGTAAATTTGTGTCTTGTCAGAGAAGTTTTGATGGTGTATCTGGCTTTAAAATATTGGTCTTCAGTGATGAGAAGCTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCACATATTGGTTTAGGATTACTTAATAATCTGTCACGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATACGAAAACTTCTGAAAAAGATACCTTGGAGCTGGACATTCATGATACCCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTCCTTAATGTATGGCGATTGATACGAGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCATTTCACCACAAAGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCAGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATTTTAAACCAACTTGATTTGGTGAATCGAACATCAGAACTTGCTCGTGTGTTTGGCATAGAGTTCTTCTCTGTTCTGTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAGTGCCTTCCTCTAGTAATGGAACCGGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTTCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTCGGTAAAGTTGTGGGATCAAAGGCCAATACACTTGGCGTTAGTCCATTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTATACCTTCCAAGGTTAGAAAAGGTATACTGCCCCGCTTATTGGAAGAAATCTTGACAACTAGAATTATGGTAAAACAAGCAATTAAGAAATTGGCTCCTTCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTAAAGCTCATAGCAAACGTAACATATGGTTACACGGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGCCGTAGTACATTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGTGGACGCACTGTCAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCATCTGCTATCACTGCTATGAATCCTAACCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTTCTCCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAATTTGAACCTGTATTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCGGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTATTTTGAACAACAGGATTTATTAGAGGTAAAGACTTATTTGCAACGTCAATGGAAGAGGATTCTTTCAGGCAAATTTTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCATGGGTACCTACAGTACGAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCGATGAGGGTTGACCCTAGGGCAGAACCCCGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCTTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATTAATAAGCAAATAATACCAGCTTTACAACGGGTATTTGGGCTTGTTGCTGCTGACCTGAACCATTGGTTTTCAGAGATGCCCCGCCCCACAAGGGAAGCTTCTGCAAAGCATAACTTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAGCCCGTTTATGCAATCAATGCTCTGAAAATGAAGTCGCCGCCGCAACAGCAGTAATTAGTAAGACTTCGAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGCCTTCGTGAAAGTGGTGTGAAATGCACGTCCATGTCATGCTTGGTGTTCTATGAGAGGAGGAATGTTCAGAAAAAACTGCTAGCTGCCACCCAGGTTGCTGCAGATAAAGATTTGTATCCGAGATGCAGTGTGGAATGGTTCTGA 5811 0.4077 MSDSQSNTEIFSVRIVSIDYYMAPPFPDTDICYSSFHGGKVNEVPVIRVYGSTPAGQKTCVHMHRALPYLYVPCSDIPLQLDQGDAFTYKVAASLEKALKAGAVFDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRHPIPDTCKTLNIDSQHRKADPPAHACLESKLWISSMIPSEWMWLPPSKSSASFNDEVHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMLSEPGKPLPEDVMKLFSVGLDFEKKIIELCSEAETSLFCTPSGQERRETDIIGSASPPATLCKNAKLHEEGGTDANLEMLTMDEIQSSEMIGRMDIKAGANNEAQNLLKWLATSQAAEDINSDDELAYETILTPLLPAATIDKVLEEANMAYESESQKECQDILDSTDGVLELELPKEKLSYSFVHNCPFRTSSNSKLPQVDGSNDDEFSSPCGSLAGTSSLAETNSEFKSASEYHVVHSTTTCKVSKEERNKKWGSLPFPMIDKVNNDGEGATLPVTHPDDNEIGDSTHSDHLNRNEVRISACTRNKDKDVSDSKEVDRSINRSLRDLMRRKRSYRVEQAEFESGITKKLLLDRHEEPNTCFWQNQLDLNTMQTDEEEMENQKICEYEVSNHANFVHEKLPLSTGSDSPLQSSRPKDECFGQHEMVGIEASSVVRNCINGGSTLMHDGPGLHKPEKLYLFDSIDQSGACRGENLKVGMALTKDVASNSYIQNPILDTRFKTAAVHAVRAPERSPQTDSSASTSVQSSFNDFKVFGKYNCVDQSSHQSLSVVQNDQMTSCENSGKKSATSDVQILFSEKVDDQKLGENLLHEIIGSEPTDLKGNHMKLTEITTSKNPPADKNLKSTLCLPTTSDTHLHLDEDSSDEIPGDDLDVFLPISARDSKKGMETCNEYTVKTLTPRGTMGATTLYQNDGSHLYLLTPNILPPSVDTVHKWLPCNERGHIPDHIHKETDAENKDVPKCASETDPPLGRKLYQDADREKMPSCIEGQTERVKTHLDDSQDISQISGPDGKSIYTPLSQIGFQDPASVGRGQQLTLLSIEVLAESRGDLLPDPQFDGINIIALGFQNDSDSIVEVLVLLHSKFVSCQRSFDGVSGFKILVFSDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHIGLGLLNNLSRTPSESLIASEDTKTSEKDTLELDIHDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAESVLRRKIPSFHHKVLTKWFSSGPGRARYQCIKYVIERAKLNLEILNQLDLVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFIPSKVRKGILPRLLEEILTTRIMVKQAIKKLAPSEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLSGRTVKESFQIGSEIASAITAMNPNPVTLKMEKVYHPCFLLTKKRYVGYSYESPHQFEPVFDAKGIETVRRDTCGAVAKIMEQSLRLYFEQQDLLEVKTYLQRQWKRILSGKFCLKDFIFAKEVRMGTYSTRMSSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVAADLNHWFSEMPRPTREASAKHNLTSNSHRTRIDYYYLSKHCVLCGRLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAICHHCGGGDSLRESGVKCTSMSCLVFYERRNVQKKLLAATQVAADKDLYPRCSVEWF 1936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00341 1936 PRINTS DNA-directed DNA-polymerase family B signature 1402 1415 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst6g00341 1936 PRINTS DNA-directed DNA-polymerase family B signature 1511 1523 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst6g00341 1936 PRINTS DNA-directed DNA-polymerase family B signature 1567 1575 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst6g00341 1936 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 99 1929 IPR030559 GO:0006281|GO:0016035|GO:0019985
Spst6g00341 1936 FunFam DNA polymerase 1084 1385 - -
Spst6g00341 1936 CDD DNA_polB_zeta_exo 1074 1324 - -
Spst6g00341 1936 Gene3D Palm domain of DNA polymerase 1388 1633 IPR023211 -
Spst6g00341 1936 Pfam C4-type zinc-finger of DNA polymerase delta 1835 1908 IPR025687 -
Spst6g00341 1936 Pfam DNA polymerase family B, exonuclease domain 1077 1221 IPR006133 -
Spst6g00341 1936 Gene3D - 1644 1810 IPR042087 -
Spst6g00341 1936 FunFam DNA polymerase zeta 1469 1528 - -
Spst6g00341 1936 MobiDBLite consensus disorder prediction 993 1012 - -
Spst6g00341 1936 FunFam DNA polymerase 1644 1812 - -
Spst6g00341 1936 ProSitePatterns DNA polymerase family B signature. 1569 1577 IPR017964 GO:0000166|GO:0003676
Spst6g00341 1936 Gene3D - 1109 1385 IPR036397 GO:0003676
Spst6g00341 1936 SUPERFAMILY DNA/RNA polymerases 1389 1803 IPR043502 -
Spst6g00341 1936 Gene3D DNA Polymerase, chain B, domain 1 87 143 - -
Spst6g00341 1936 Gene3D DNA Polymerase, chain B, domain 1 30 86 - -
Spst6g00341 1936 Gene3D Helix hairpin bin 1468 1528 - -
Spst6g00341 1936 CDD POLBc_zeta 1350 1798 - -
Spst6g00341 1936 Pfam DNA polymerase family B 1343 1790 IPR006134 GO:0000166|GO:0003677
Spst6g00341 1936 MobiDBLite consensus disorder prediction 456 476 - -
Spst6g00341 1936 SMART polmehr3 1075 1581 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst6g00341 1936 SUPERFAMILY Ribonuclease H-like 35 1370 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00341 Spst-Chr6 3316204 3332038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00341 1079 1920 Core DNA Replication Machinery Family AT5G63960 28.917 7.75e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00341 K02350 - gmx:100777934 3217.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00341 6 3316204 3332038 Spst6g00341 6 3316204 3332038 ECH