Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00336 ATGGTTGGTTTCACCTTGCATGAAGTTGTGGTTACCTCCACAAGTCAAATCATTGCAATAACTAATGCAAAGGGTATGCAAGTAGTGAATGATGTTGAGGAGAAGATCATGACAGAAACCTTATATGATGATGTTCTTGTTGGCTTCGAACCGAAGAACTGTTCTTTTGAGCTCAAATTGGCGGAGAAAATGGAAGAAGACGACGATTATGAGGAGTATGTGCCCGTGGCCAAGCGTCGGGCTATTGAAGCTCAGAAGATTCTCCAACGCAAGGGGAAGGCCCCTGTCGCCATTGATGATGATTTGGAGAAACAGAGAGTGGCTGAATCTAAGCCTAGTCTTCTGGTTAAAGCGTCACAGTTGAAACGAGAACAACCCGAGATAAGTGTGACGGAGCAGATTGTTCAGCAGGAGAAGGAGATGATTGAAAACTTGTCGGATAGGAAAACCCTCATGTCTGTTCGTGAATTGGCGAAGGGAATCACTTACTCGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCAAAGAAAGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATAGTTGATGGTGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCTGAACCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGACTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCTTTCACGGGCTCTGGTAAAACACTTGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCTGGAGAAGGTCCGTTTGGTTTGATTATTTGCCCCTCAAGGGAACTGGCTAGGCAGACTTATGAAGTGGTCGAACAATTCTTGATACCTTTGAAGGAAGCCGGATATCCAGAGCTCAGGCCTTTGCTTTGTATTGGTGGGGTGGATATGAGATCGCAGCTTGAGATTGTGAAGAAGGGTGTACATATTGTTGTTGCCACTCCTGGGAGGTTAAAGGATATGTTGGCGAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGGTTGGTGGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTCGATCACTTCAAAGCTCAAAGGCAGACTCTTTTATTTTCTGCCACTATGCCAACCAAAATTCAGAACTTTGCCAGGAGCGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCAGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAAATAGTGTATCTCCTTGAGTGCCTACAAAAAACCCCACCACCAGTTCTGATTTTTTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGGGTGGAAGCAGTGGCTATTCACGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCGATTGCAGCTTTTAAGGCTGGCAAGAAAGATGTGTTGGTTGCAACAGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGACGAACTGGTAGATGTGGGAAAACTGGTATAGCCACGACATTTATAAACAAGAATCAAAGTGAAACAACATTACTTGATTTGAAACACCTATTGCAAGAAGCAAAACAAAGGATTCCCCCAGTTTTGGCTGAGTTGAACGATCCAATGGAAGATAATGATGAAATCACAGACATTAGTGGAGTCAAGGGATGTGCATATTGTGGTGGACTTGGTCATCGTATACGTGATTGTCCCAAGTTAGAACATCAGAAGAGCATGGCCATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1956 0.4279 MVGFTLHEVVVTSTSQIIAITNAKGMQVVNDVEEKIMTETLYDDVLVGFEPKNCSFELKLAEKMEEDDDYEEYVPVAKRRAIEAQKILQRKGKAPVAIDDDLEKQRVAESKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYSEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00336 651 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 161 592 - -
Spst6g00336 651 CDD SF2_C_DEAD 433 561 - -
Spst6g00336 651 FunFam Probable ATP-dependent RNA helicase DDX41 173 422 - -
Spst6g00336 651 Coils Coil 128 148 - -
Spst6g00336 651 SUPERFAMILY Retrovirus zinc finger-like domains 609 630 IPR036875 GO:0003676|GO:0008270
Spst6g00336 651 Pfam Helicase conserved C-terminal domain 445 552 IPR001650 -
Spst6g00336 651 Pfam Zinc knuckle 609 625 IPR001878 GO:0003676|GO:0008270
Spst6g00336 651 Gene3D - 174 425 IPR027417 -
Spst6g00336 651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 421 IPR014001 -
Spst6g00336 651 SMART helicmild6 471 552 IPR001650 -
Spst6g00336 651 CDD DEADc_DDX41 217 422 IPR044113 GO:0000398|GO:0003724|GO:0005524
Spst6g00336 651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 432 592 IPR001650 -
Spst6g00336 651 Gene3D - 431 593 IPR027417 -
Spst6g00336 651 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 206 234 IPR014014 GO:0003724
Spst6g00336 651 SMART c2hcfinal6 609 625 IPR001878 GO:0003676|GO:0008270
Spst6g00336 651 FunFam Probable ATP-dependent RNA helicase DDX41 431 593 - -
Spst6g00336 651 SMART ultradead3 225 436 IPR014001 -
Spst6g00336 651 Pfam DEAD/DEAH box helicase 230 409 IPR011545 GO:0003676|GO:0005524
Spst6g00336 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 567 IPR027417 -
Spst6g00336 651 Coils Coil 563 583 - -
Spst6g00336 651 ProSiteProfiles Zinc finger CCHC-type profile. 610 625 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00336 Spst-Chr6 3274347 3278999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00336 206 587 Eukaryotic Initiation Factors Gene Family AT3G13920 30.130 1.73e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00336 K13116 - gmx:100814127 1142.87