Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00335 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCCACAGAGAACACGGGAGAAGATGCAGCAGCTGTTAAACAGCAATTAGAGATGCTTGGCCAACTCCATAGTCCAAATTCAAACACTTCAACTACAACAAATAATAGCAATGCCTCAAACACAACCTCACAACCACCTCCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAATGCCGAAGTGGTAGCTCTATCACCAAACACTCTTGTGGCAACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGACATAACCTACCGTGGAAGCTCAAACTCAGAACCACGACGGAAGTCAGAAAACGCGTTTACGTTTGCCCCGAACCCTCCTGTGTCCACCACAACCCAGCTCGCGCGCTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGTCGAAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCCAAGAAATACGCTGTTCATTCTGACTGGAAAGCTCATTCCAAAGTATGTGGAACCAAGGAATACAAATGTGATTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACACACAGAGCTTTCTGCGATGTACTGAGTGATGAGAACAACAAATTCAACGAATTAGGACCATTGCCAAATATCATGCATGGTTCAAACCTGCAACCACCAATAATCCCAAACCTAGTTGCATCACTACCAGTCAATACCAATAATCACAAGCTACCATTATCACTCCCTCACGACCTCATTGCAACAATTCCAGCGAAACCCTTTAACAGCAACATGGCAGCATTTACAAGAAGCCTTCCATCCACCACTTCTCCCTCTCAACTGTGCTCAAACTCACCAAATATCAACATGTTCGAGGAAAATGCTCAAACTCACTTGTCCGCCACAGCATTGCTCCAAAAAGCTGCACAAATGGGCGCAACATTGAATACTAACAACAGCAGCATGATGAGTGAAAAGGGTTTTGCTACAAGCATGGCACCACCATCGTATGGGGTCATGAACCCCAACATGCACAATGGTCAACAAGACTTGTCTCAGTATGACTTCAATGCAAATGGGACGATGATAGATGGTGGTGGCAATGCCATGGGAGGAGAAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATCGAAGTAGTTATAGCGGTGTTTTGCATGCAATGAATGGTACGTCGAGTGTTTCTTCCATTGATGTTGGTGGAACCAAAGGGGGTGAGAGTGTCATGACTTTGGACTTGTTGGGGATTGGAGGAGGAGGAGGAGGTGGTGATGGAAATTTCTTTGGTGGTGACCAACAATCAGAACTAAAGATGGAATATGGAGAAATTGGTCAAATAAGAATGCAGGGATTGAACCATTTTCAGCAACAACCAGCTGCATATGAAAATTAA 1506 0.4429 MSNSNITSCDSWSFSTENTGEDAAAVKQQLEMLGQLHSPNSNTSTTTNNSNASNTTSQPPPKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKVCGTKEYKCDCGTIFSRRDSFITHRAFCDVLSDENNKFNELGPLPNIMHGSNLQPPIIPNLVASLPVNTNNHKLPLSLPHDLIATIPAKPFNSNMAAFTRSLPSTTSPSQLCSNSPNINMFEENAQTHLSATALLQKAAQMGATLNTNNSSMMSEKGFATSMAPPSYGVMNPNMHNGQQDLSQYDFNANGTMIDGGGNAMGGEMSGLDMFNAILDQSKALSKIIEQNNRSSYSGVLHAMNGTSSVSSIDVGGTKGGESVMTLDLLGIGGGGGGGDGNFFGGDQQSELKMEYGEIGQIRMQGLNHFQQQPAAYEN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00335 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 470 IPR031140 -
Spst6g00335 501 Gene3D Classic Zinc Finger 146 223 - -
Spst6g00335 501 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Spst6g00335 501 SMART c2h2final6 167 187 IPR013087 -
Spst6g00335 501 SMART c2h2final6 132 162 IPR013087 -
Spst6g00335 501 SMART c2h2final6 91 113 IPR013087 -
Spst6g00335 501 FunFam protein indeterminate-domain 12-like 70 138 - -
Spst6g00335 501 Pfam Zinc finger, C2H2 type 91 113 IPR013087 -
Spst6g00335 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Spst6g00335 501 MobiDBLite consensus disorder prediction 33 63 - -
Spst6g00335 501 MobiDBLite consensus disorder prediction 1 75 - -
Spst6g00335 501 Gene3D Classic Zinc Finger 87 114 - -
Spst6g00335 501 MobiDBLite consensus disorder prediction 1 23 - -
Spst6g00335 501 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Spst6g00335 501 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00335 Spst-Chr6 3260578 3263509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00335 42 224 IDZ Gene Family AT5G66730 77.128 2.16e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst6g00335 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00335 - - pvu:PHAVU_006G090800g 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00335 6 3260578 3263509 Spst10g00043 10 451700 455146 ECH
Spst6g00335 6 3260578 3263509 Spst6g00335 6 3260578 3263509 ECH
Spst6g00335 6 3260578 3263509 Spst10g00043 10 451700 455146 PCT