Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00326 ATGAAGAACGATGAAACAAAGAGTAAATCCCCGTCTCCTAACAAGCATCTACTTGAGCCAAAACGGTTGCAAAACATAGCAATACTATCTAAAGCACTAAATGCAACAGCCAGAGAAGTATGCGATGCCCTGATACTAAGGAAGGGTTTGTCTTTGCAACAACTAGAGGCACTGGTGAAAATGGTACCCACGAAGGAAGAAGAGGATAAGCTCTTGAGCTACAAAGGACAAGTCGATGAACTAGGGTTCGCAGAAAAGTTTGTGAGAGCAATGCTTAGCATACCATTTGCCTGTCAACGAGTGGAAGCAATGCTTTACAGAGAAGCTTTCGAAGATGAAGTGGCTCACCTCAGCAACTCTTTCACAATGCTGGAGGAAGCGTGCAAGGAACTAAGGTCAAGCAAGTTCTTCTTGAAATTGCTCGAAGCAGTGCTCAAAACAGGAAACCGCATGAACGTGGGGACAACCAGGGGAGGTGCTAGAGCCTTCAAACTTGATGCCCTTCTCAAGCTTGCTGATGTAAAAGGAACAGATGGTAAAACCACCTTGCTCCATTTCTTTGTTCAGGAGATAATTCGCTCAGAAGGAACCAAAGCTTCAAAGAGCATCATGGGGCAGAAGCGTGAAAACGGAACGGAGGAAGAGAAGGAAGAAGATTGTAGAAGAATGGGACTAAAACTTGTCTCTGATCTTAGTGCTGAGTTATGCAATGTTAAAAAGACCGCCACAATTGACTTAAGCGTTCTTGCAAGTTCTGTCTCGAACCTATCAACTGGGTTGGCTAACATGCAGAACCTAGTAAGAGGGTTGTTGTGTGAAGATGAAAAAAATAAGAGCTTTGTCATTTCTATGAAGTGGTTTCTGAATTATGCAGAAAGAAAGGTACAAGACTTGCATGGAGATGAAGGTAGAGTGATGAGTCGTGTAAAAGAAATAATTGAGTATTTTCATGGGGATGTGACTAACGAAGAGTCGAATCCACTTCAAATCTTTGTGATTGTTAGGGACTTTCTGGAGATGATAGATAACGTGTGTAATGATCTTAAAAGATGCAACAATACTAAAAATATAATTCTTCCACGCAATCTAATCCCGTACTTAGCCACTAACAAGAAGACAACACCGTCGGATCGGACGAGCGAAACCACATGGATTGCCAGCAAGTCAACACAATCAACCGTGGGATCTTTAGGCACGGATCGCCAGCGTGGCACGACCGGAGCCGCGAGATGTTTCCCTGGGTACAAACGCGATCGGCAGCATTTGTCGTTTACCCGCAGTATTTATTCGGCGTTCCCTCTCGTTTTGCTCAGTGCTTACAATTCCAAAGATTCGAAGAAAAGGAAAAAACGCTTCTTCATCGGGTTCCCTCCAAACGAACCGTTCGCTATCATCTCGGATCACGCATCAATGGAGGCGACCCCCAAAGGTGCCGCTGGAAGAAGAGGCGACAGGAAGAAGTCCGTTTCCAAATCTACCAAAGCCGGTCTCCAATTCCCCGTCGGCCGCGTCGCCAGGTACTTGAAGAAAGGCCGTTACTCCCGCCGTTTAGGCACCGGCGCTCCAATCTATCTCGCCGCCGTACTCGAATACCTCGCCGCCGAGGTGTTGGAGTTGGCTGGGAACGCCGCACGTGACAACAAGAAGAACAGGATTAACCCTAGGCACGTACTTCTCGCTGTGAGGAATGATGATGAATTGGGTAAACTGCTTCAGGGTGTAACGATTGCTAGCGGTGGAGTGTTGCCGAATATTAACCCGGTTTTGTTGCCTAAGAAAGCTACCAGTGCCGATTCTGACAAACCATCTACTCCTAAGTCTCCTAAGAAGAAATAA 1836 0.4602 MKNDETKSKSPSPNKHLLEPKRLQNIAILSKALNATAREVCDALILRKGLSLQQLEALVKMVPTKEEEDKLLSYKGQVDELGFAEKFVRAMLSIPFACQRVEAMLYREAFEDEVAHLSNSFTMLEEACKELRSSKFFLKLLEAVLKTGNRMNVGTTRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIIRSEGTKASKSIMGQKRENGTEEEKEEDCRRMGLKLVSDLSAELCNVKKTATIDLSVLASSVSNLSTGLANMQNLVRGLLCEDEKNKSFVISMKWFLNYAERKVQDLHGDEGRVMSRVKEIIEYFHGDVTNEESNPLQIFVIVRDFLEMIDNVCNDLKRCNNTKNIILPRNLIPYLATNKKTTPSDRTSETTWIASKSTQSTVGSLGTDRQRGTTGAARCFPGYKRDRQHLSFTRSIYSAFPLVLLSAYNSKDSKKRKKRFFIGFPPNEPFAIISDHASMEATPKGAAGRRGDRKKSVSKSTKAGLQFPVGRVARYLKKGRYSRRLGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKATSADSDKPSTPKSPKKK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00326 611 Pfam C-terminus of histone H2A 565 596 IPR032454 -
Spst6g00326 611 Gene3D Formin, FH2 domain 1 357 IPR042201 -
Spst6g00326 611 Pfam Formin Homology 2 Domain 4 340 IPR015425 -
Spst6g00326 611 SUPERFAMILY Histone-fold 490 593 IPR009072 GO:0046982
Spst6g00326 611 MobiDBLite consensus disorder prediction 473 493 - -
Spst6g00326 611 SMART h2a4 476 596 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 FunFam Histone H2A 476 603 - -
Spst6g00326 611 ProSitePatterns Histone H2A signature. 495 501 IPR032458 -
Spst6g00326 611 CDD H2A 479 593 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 367 IPR015425 -
Spst6g00326 611 PANTHER FORMIN-RELATED 7 381 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Spst6g00326 611 MobiDBLite consensus disorder prediction 393 412 - -
Spst6g00326 611 Pfam Core histone H2A/H2B/H3/H4 484 562 IPR007125 GO:0003677
Spst6g00326 611 SUPERFAMILY Formin homology 2 domain (FH2 domain) 16 352 - -
Spst6g00326 611 SMART it6_source 1 356 IPR015425 -
Spst6g00326 611 Gene3D Histone, subunit A 475 601 IPR009072 GO:0046982
Spst6g00326 611 PRINTS Histone H2A signature 573 591 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 PRINTS Histone H2A signature 531 544 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 PRINTS Histone H2A signature 516 531 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 PRINTS Histone H2A signature 487 509 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 PRINTS Histone H2A signature 545 559 IPR002119 GO:0000786|GO:0003677|GO:0030527
Spst6g00326 611 MobiDBLite consensus disorder prediction 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00326 Spst-Chr6 3204085 3206656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00326 2 366 FH2 protein (formin) Gene Family AT3G05470 67.838 8.64e-160 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00326 - - gmx:100805407 564.303