Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00308 ATGAGTCGAGGAAGTGCAGCAGGGGCGAAGGGGAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCGAAGCCAGTGGAAGACAAGATCATGGACATTGCCTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTGGGTGGCAAAGCTGGTGCTCTTGGTGACTCTGTTACTGTTACCCGCGAGAAGACCAAGATCATTGTCACTTCTGACAGTAACTTCTCCAAACGGTATCTGAAGTACTTGACTAAGAAGTACTTGAAGAAACACAACGTGCGTGACTGGCTCAGAGTAATTGCTTCAAACAAGGATAGAAGTATTTATGAACTGAGGTACTTCAACATAGCTGAGAATGAGGGTGAGGAAGAAGATTAG 375 0.464 MSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00308 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Spst6g00308 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Spst6g00308 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Spst6g00308 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00308 Spst-Chr6 3061411 3062307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00308 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.097 1.01e-67 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00308 K02891 - gmx:100499952 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00308 6 3061411 3062307 Spst10g00027 10 310100 310652 ECH
Spst10g00027 10 310100 310652 Spst6g00308 6 3061411 3062307 ECH
Spst6g00308 6 3061411 3062307 Spst6g00308 6 3061411 3062307 ECH
Spst6g00308 6 3061411 3062307 Spst10g00027 10 310100 310652 PCT