Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00297 ATGGGGAGTGATGGACAGAAGAGAATTGCCATCATTGGCGTGTCTACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTGACGGTTAGCGTGAACTTCAGCAACAAGGGAGAAATCGAGGATGAAAAGGAAGCATCAAAATCTCACGTAGCTTCCTCGATGAAAGCGGTGAAGACCCTTTGCGCACCCACCGAATACCAGAAAGAATGCGAAGACAGTCTGAATGCCAACGCCGGCAACGTCACGGACCCCAGGGAACTAATAAAAATCGCCTTTAACGTCACCATTAGTAGAATCAGCGACGGACTTGGAAAAACGCAGCTCATGCAGGAAGTCGAGAGCGACCCCAGAACCAAAGAGGCCCTCGACACATGTAAACAACTCATGAACCTCTCCATCGAGGAGTTCAGGCGCTCCATCGACAGGTTCAACAAGTTCGACCTCAACAGCCTTGACCGCATCCTCACCAGTCTCAGGGTGTGGCTCAGTGGCGCCGTCACGTACCAGGAAACGTGCCTTGATGCGTTCGAGAACACCACAACCGACGCTAGCAAGAAGATGCAGGGGCTCTTGCAAACCTCCATGCACATGACCAGCAACGGCCTCTCTATCATCAACGAGCTGGCAAAAACTCTCTACGAGATACGCGGCAACAAGCCTGGGCGCCGCCTCCTGAACTCTGCCGATGGCTTGCCCCTTTTTGGCCAGGAAGCCGGTGACTTTGACGTTCCCGATTGGGTTGAGAACCGCGTTGGCGTTCGCAGACTCATGAAAATGACTGGTCGCAAAAGCATGGCACATGTTGTTGTTGCCCAGGATGGCAGCGGCAATTTCACCACCATCAACGATGCTTTGAAGTCCGTGCCCAAGAAAAATCTAAGGCCCTATATTATCTACGTCAAGGAGGGTCTTTACAACGAGTACGTCGAAGTTGCCAGAAATATGACCCATGTCGTCATGATAGGCGATGGTGGTAAAAAGACAAGAATCACAGGCAGCAAAAACTTCGTCGACGGAGTTGGTACCTTCAGAACCGCCAGCGCTGCTATTCTTGGAGATTTCTTCGTTGGCATAGGTATCGGATTTGAGAACACTGCCGGCCCTGAAAAACATCAGGCAGTTGCATTGAGGGTTCAATCCGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTATCAAGACACTCTCTACGCCCACACCATGCGCCAATTCTACCGCGACTGTGTCATTTCTGGCACCATCGACTTTGTCTTCGGTGACGCAGTGGCTGTTCTCCAGAACTGCACATTCGTGGTCCGAAAACCCTTGTCAAACCAGCAATGCATTGTGACCGCACAAGGCAGAAAGGAGGTTAACCAGCCATCCGGTCTAGTCATCCATGGAGGGTCCATTGTGTCAGACGTCAAGTACTACCCATATAGGTTCGACAACAAGGCCTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGACTCTTACATTGGTGACTTGATCACACCCGATGGCTACATGCCATGGCAAACATTGGAGGGCTTTTCCGGAATGGACACTTGCTTTTACGCTGAGATCGACAACCGCGGCCCTGGTGCAGACAAAACGAAGCGCGTGAAATGGCAGGGAATCAAGACCCTCCCAGAAAACGAAGCATCTACATTCCTGCCAACTCTGTTCTTCCATGGAGATGACTGGATTAGGGTGACTAGGGTTCCTTACGACTCTGGTATGATCCCCGTCGCTCACTGA 1755 0.514 MGSDGQKRIAIIGVSTFLLVAMVVAVTVSVNFSNKGEIEDEKEASKSHVASSMKAVKTLCAPTEYQKECEDSLNANAGNVTDPRELIKIAFNVTISRISDGLGKTQLMQEVESDPRTKEALDTCKQLMNLSIEEFRRSIDRFNKFDLNSLDRILTSLRVWLSGAVTYQETCLDAFENTTTDASKKMQGLLQTSMHMTSNGLSIINELAKTLYEIRGNKPGRRLLNSADGLPLFGQEAGDFDVPDWVENRVGVRRLMKMTGRKSMAHVVVAQDGSGNFTTINDALKSVPKKNLRPYIIYVKEGLYNEYVEVARNMTHVVMIGDGGKKTRITGSKNFVDGVGTFRTASAAILGDFFVGIGIGFENTAGPEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCVISGTIDFVFGDAVAVLQNCTFVVRKPLSNQQCIVTAQGRKEVNQPSGLVIHGGSIVSDVKYYPYRFDNKAYLARPWKNFSRTIFMDSYIGDLITPDGYMPWQTLEGFSGMDTCFYAEIDNRGPGADKTKRVKWQGIKTLPENEASTFLPTLFFHGDDWIRVTRVPYDSGMIPVAH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00297 584 SUPERFAMILY Pectin lyase-like 265 577 IPR011050 -
Spst6g00297 584 Pfam Plant invertase/pectin methylesterase inhibitor 55 203 IPR006501 GO:0004857
Spst6g00297 584 Pfam Pectinesterase 266 565 IPR000070 GO:0030599|GO:0042545
Spst6g00297 584 Gene3D - 263 581 IPR012334 -
Spst6g00297 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 209 IPR035513 -
Spst6g00297 584 PANTHER PECTINESTERASE 16 569 - -
Spst6g00297 584 FunFam Pectinesterase 260 579 - -
Spst6g00297 584 SMART PMEI_2 51 203 IPR006501 GO:0004857
Spst6g00297 584 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Spst6g00297 584 CDD PMEI-like_3 58 209 - -
Spst6g00297 584 NCBIfam pectinesterase inhibitor domain 47 207 IPR006501 GO:0004857
Spst6g00297 584 FunFam Pectinesterase 52 208 - -
Spst6g00297 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00297 Spst-Chr6 2957121 2958979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00297 3 580 Carbohydrate Esterase AT3G05610 47.341 0.0 568