Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00296 ATGGCTATTTCCAAGCTGTCCTTGAGCTTATTCATGGTCTATTTTCTAAGCATTTTCTGCAAATATGCGTCTCTTGCATCCTCCTCATTCTCCACCGATACCATTTGCAACCTCACACCTTATCCATCATTTTGCAAATCCATCTCTCCTAAGGGCCAAGGCGACATACACGAATATGGCCGTTTTTTCGTAGGAAAATCCGTGTCTTTCTCACAAAGCTTTTTCACATTCATCTCTAAATACCTTAACTCAAACTCCACTATCCTTGCCCTTCAAGATTGTTACCTTCTGGCTGACCTGAGCCAGAGTTTTTTGTCCAAGACTCTAAAAAGCATCAATTCCGCTTACACCCTCGGTACCTCTGAAGCTGAAAAATTACACACTTTGCTTAGTGCTACACTGACCAACCACGACACGTGCTTAAACAGCCTTCACGAAACCACCTCAAAACCCGATCATGACCTACTAACACATCTTTCCTACGGAACCAAGCTTTATAGCATATCTCTTGCGATCTTTAAGAGGGGATGGAGAGCCAATAAAAAGACAGAGAGAGAGCTTGAAACAAATTATCATATTGTGTGGGAACAGAAGTTGCACGAGCTTACTAGAATAAGAGGAAGAAAACTGCTTCAGTTGGGTGCAGAAAACGTCTTAGTGAGTCAAAGCGTGGTGGTGAACCCAGACGGATCTGGAGACTACACGAAAATCAATGATGCAGTGGCTGCAGCTCCAAATAACACCGACCTTAGTAACGGGTTTTTCGTGATTCATGTGGTGGGTGGAGTGTATGAAGAGTATGTTTCTATTCCCCAATACAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAGACCATAATCACGGGCAATCGCAGCGTGGCTGATGGTTGGAGTACGTTCAGTTCTGCTACATTCGCCGTATTTGGGCAAGGTTTTGTGGCAATGAACATAACTTTTCGCAACACAGCTGGAGCAATCAAATACCAAGCAGTAGCCCTCAGGAGCGGGGCAGACAGTTCTGCATTTTACAAATGTAGCTTTGAAGGGTACCAAGACACCTTATACACCCAGTCTCTTAGGCAATTTTACAGAAACTGTGATATTTATGGTACGGTGGACTTCATATTTGGTAATGCAGCAGTTGTCTTGCAAAACTGTAACATCTACCTAAGACTACCAATGCGAAACCAATTCAATGCCATAACTGCACAAGGTAGGGCTGACAGTAACCAAAACACTGGCATCTCTATACACAAATGTAAAATAACCGCGGCAAGTGACTTGGCCAATAGTAGTACCACCACAAAAACTTATTTAGGAAGACCCTGGAGGCTATATTCACAAACAGTTTATATGCAGTCTTTCATGGACAGTTTGGTGGATGCAGAGGGTTGGGTAGCTTGGTCCGGGGACTTTGCTTTGGACACCCTTTATTATGCGGAATTTGATAATTATGGACCTGGATCTGACACCAGTAATAGGGTTACTTGGCCTGGGTACCATGTGATCAATGCAACTGATGCTGTTAATTTCACTGTTGCTAATTTTATACTAGGTGGTCTCTGGCTTCCTGCAACAGGAATACCTTACTCTTCTGGATTACTGTGA 1614 0.4325 MAISKLSLSLFMVYFLSIFCKYASLASSSFSTDTICNLTPYPSFCKSISPKGQGDIHEYGRFFVGKSVSFSQSFFTFISKYLNSNSTILALQDCYLLADLSQSFLSKTLKSINSAYTLGTSEAEKLHTLLSATLTNHDTCLNSLHETTSKPDHDLLTHLSYGTKLYSISLAIFKRGWRANKKTERELETNYHIVWEQKLHELTRIRGRKLLQLGAENVLVSQSVVVNPDGSGDYTKINDAVAAAPNNTDLSNGFFVIHVVGGVYEEYVSIPQYKQYLMMIGDGINQTIITGNRSVADGWSTFSSATFAVFGQGFVAMNITFRNTAGAIKYQAVALRSGADSSAFYKCSFEGYQDTLYTQSLRQFYRNCDIYGTVDFIFGNAAVVLQNCNIYLRLPMRNQFNAITAQGRADSNQNTGISIHKCKITAASDLANSSTTTKTYLGRPWRLYSQTVYMQSFMDSLVDAEGWVAWSGDFALDTLYYAEFDNYGPGSDTSNRVTWPGYHVINATDAVNFTVANFILGGLWLPATGIPYSSGLL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00296 537 FunFam Pectinesterase 217 536 - -
Spst6g00296 537 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Spst6g00296 537 CDD PMEI-like_3 34 178 - -
Spst6g00296 537 Gene3D - 218 536 IPR012334 -
Spst6g00296 537 SMART PMEI_2 26 172 IPR006501 GO:0004857
Spst6g00296 537 NCBIfam pectinesterase inhibitor domain 5 174 IPR006501 GO:0004857
Spst6g00296 537 Pfam Pectinesterase 224 521 IPR000070 GO:0030599|GO:0042545
Spst6g00296 537 PANTHER PECTINESTERASE 13 526 - -
Spst6g00296 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 175 IPR035513 -
Spst6g00296 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 175 IPR035513 -
Spst6g00296 537 SUPERFAMILY Pectin lyase-like 222 535 IPR011050 -
Spst6g00296 537 Pfam Plant invertase/pectin methylesterase inhibitor 33 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00296 Spst-Chr6 2954141 2956447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00296 6 537 Carbohydrate Esterase AT4G02330 53.497 0.0 573