Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00295 ATGGCCATGCTCAGTTTCCTTTTCATTCTCATGCTTTTACCCTCATTTGAGGCTCTCTCATATCAAGCCATTCCTTCAGGAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGACGTTGAAAACCAAAACTCGTGCCTCACAAACATCCACAACGAGCTCACCAAAATAGGCCCTCCAAGCCCCACTTCGGTGATGAGTGCAGCACTCAAGGCAACACTCAATGAAGCAATAGTGGCCATTGACAACATGACTAAGATCACCACATTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGACTGCAAGGAGCTCTTGGATTTTTCGGTTTCTGAGCTGGCATGGTCGTTGGGGGAGATGAGGAGAATTCGTGCAGGAGATACCAATGTGCAATACGAGGGCAACCTCGAGGCGTGGCTTAGTGCAGCACTGAGCAACCAAGACACGTGCCTTGAAGGGTTCGAAGGCACAGATAGACGCCTTGAGAGCTACATCAGTGGAAGCTTGACACAAGTCACGCAACTCATCAGCAATGTTTTGTCTTTGTACACTCAACTGCATACCTTACCCTTTAAGCCTCCAAGAAACACTACTACTAAAACAACTGAATCTGATGGAACCTTGGAGTTTCCCGAATGGATGAGTGAGGGTGATCAAGAGTTGCTCAGAGCCAAGCCACATGGTGTGCGTGCGGACGCGGTTGTGGCTTTGGATGGGAGTGGTCACTATCGCTCTATATCCGAAGCTGTTAATGCAGCACCGAGTCATAGTGAAAGGAGGTACATTATTTACGTGAAAAAGGGGCTTTACAAGGAGAATGTAGACATGAAGAAGAAGATGACCAACATCATGCTCGTGGGAGATGGTATTGGCCAAACCATTATCACTAGCAACCGTAATTTCATGCAAGGATGGACCACTTTCCGAACTGCCACGCTTGCTGTATCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCAGTGAACCATCAAGCGGTGGCACTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTGTGGAAGGCCACCAAGACACCCTCTACGCCCACTCCCTGCGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGCAATGGGGCTGCAGTGTTGCAAAACTGCAAAATATACACCAGAGTCCCACTTCCCTTGCAGAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACACCAGACCACCGGCTTCACCATCCAGGACAGCTTTGTTCTCGCCACCCAGCCCACCTACTTGGGCCGGCCCTGGAAGCAATACTCCAGGACAGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGGTGGCTTGAATGGCTCGGAAACTTTGCCCTCGACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCTGGCTCATCAGTCGCGGCCCGGGTCAGATGGCCCGGTTATCATGTAATCAAAGATGCTTCCACGGCTAGCTTTTTCACTGTTCAGAGGTTCATTAATGGTGACACGTGGCTTCCAAGGACAGGTGTCAAGTTTACAGCTGGTTTGACCAATTGA 1626 0.4988 MAMLSFLFILMLLPSFEALSYQAIPSGIQTQDMQALIAQACMDVENQNSCLTNIHNELTKIGPPSPTSVMSAALKATLNEAIVAIDNMTKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDTNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFKPPRNTTTKTTESDGTLEFPEWMSEGDQELLRAKPHGVRADAVVALDGSGHYRSISEAVNAAPSHSERRYIIYVKKGLYKENVDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQTTGFTIQDSFVLATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSVAARVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00295 541 Gene3D - 232 539 IPR012334 -
Spst6g00295 541 SMART PMEI_2 32 187 IPR006501 GO:0004857
Spst6g00295 541 PANTHER PECTINESTERASE 12 529 - -
Spst6g00295 541 Pfam Pectinesterase 237 525 IPR000070 GO:0030599|GO:0042545
Spst6g00295 541 CDD PMEI-like_3 49 193 - -
Spst6g00295 541 SUPERFAMILY Pectin lyase-like 234 538 IPR011050 -
Spst6g00295 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Spst6g00295 541 FunFam Pectinesterase 231 539 - -
Spst6g00295 541 NCBIfam pectinesterase inhibitor domain 3 192 IPR006501 GO:0004857
Spst6g00295 541 FunFam Pectinesterase 34 193 - -
Spst6g00295 541 Pfam Plant invertase/pectin methylesterase inhibitor 36 187 IPR006501 GO:0004857
Spst6g00295 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 191 IPR035513 -
Spst6g00295 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 192 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00295 Spst-Chr6 2950300 2952034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00295 1 541 Carbohydrate Esterase AT3G05620 62.387 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00295 K01051 - gmx:100810565 1012.68