Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00290 ATGGTTCTCTCCAAAACCGCCTCCGAATCCGACGTTTCCGTCCACTCCACCTTCGCTTCCCGCTATGTCAGAACTTCGCTTCCCAGGCATTATTTTTCATGTGGATCTGAAGTTAATGTTTTAGTTTTGGGGAGAGAACGCAGGTTCAAGATGCCGGAGGAGTCGATACCGAAGGAAGCAGCGTACCAGATCATAAACGATGAGTTGATGTTGGATGGGAACCCGAGGTTGAACTTGGCATCGTTTGTGACGACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTGCCATTAATAAGAATTATGTGGACATGGACGAGTACCCTGTTACCACTGAGCTTCAGAATCGATGTGTGAACATGATAGCTCATCTTTTTAATGCACCACTTGAAGAATCTCAAGCTGCAGTTGGTGTAGGCACGGTCGGTTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGGAAGTGGCAAAACAGAAGGAAAGAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCGAGGTACTTTGAAGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATATAATGGACCCTGACAAGGCCGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGCTCTACACTGAATGGAGAGTTTGAGGATGTCAAACGCCTCAACGATCTCCTAGTTGAAAAGAATAAGCAAACTGGGTGGGACACTCCCATTCATGTTGATGCAGCCAGTGGTGGCTTCATTGCCCCATTTATATACCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGTATCAATGTTAGTGGACACAAGTATGGTTTGGTGTATGCTGGAATTGGTTGGGTTATCTGGAGAAGCAAGGAGGATTTGCCTGAGGAACTCATCTTCCATATCAACTATCTTGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATCCGCCTTGGTTTTGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGACGGTTTGCCATTGTGTCCAAAGACAACGGCGTGCCTTTGGTGGCCTTCACCCTGAAAGACCACACCCACTTTGACGAGTTCCAAATCTCCGACATGCTGAGGCGTTTTGGGTGGATTGTGCCAGCATATACCATGCCCCCAGATGCTCAACATGTCACAGTGCTTCGTGTTGTCATCAGGGAGGACTTCTCAAGGACCCTTGCAGAGCGTCTGGTGGCTGATGTGGAAAAGGTGGTGCATGAGCTTGATTCTCTTCCAGCGAGGGTGATAAGTAGCACCAGTGTGATAGTCAACTCAGAAGAAAATGACAGAGTGGTTAAGAAGAGTGCTCTGGAGACACAGAGAGAAATCACTGCGGTTTGGAAAAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAATGGTGTTTGCTAG 1563 0.4696 MVLSKTASESDVSVHSTFASRYVRTSLPRHYFSCGSEVNVLVLGRERRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESQAAVGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYIMDPDKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFAIVSKDNGVPLVAFTLKDHTHFDEFQISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVVHELDSLPARVISSTSVIVNSEENDRVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00290 520 NCBIfam glutamate decarboxylase 47 463 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst6g00290 520 Gene3D - 45 84 - -
Spst6g00290 520 PANTHER GLUTAMATE DECARBOXYLASE 1 510 IPR010107 GO:0004351|GO:0006536|GO:0030170
Spst6g00290 520 FunFam Glutamate decarboxylase 47 84 - -
Spst6g00290 520 FunFam Glutamate decarboxylase 380 467 - -
Spst6g00290 520 Pfam Pyridoxal-dependent decarboxylase conserved domain 52 400 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst6g00290 520 Gene3D - 380 467 - -
Spst6g00290 520 FunFam Glutamate decarboxylase 85 379 - -
Spst6g00290 520 SUPERFAMILY PLP-dependent transferases 48 463 IPR015424 -
Spst6g00290 520 CDD DOPA_deC_like 78 458 - -
Spst6g00290 520 Gene3D - 85 379 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00290 Spst-Chr6 2924380 2930008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00290 1 520 Calmodulin-binding Proteins AT5G17330 80.952 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00290 K01580 - gmx:100796533 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00290 6 2924380 2930008 Spst6g00290 6 2924380 2930008 ECH