Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00286 ATGACAATGGAAGAAGAGTCCTTGGCAACAGTCCCATTTGACAGAGCTATTGAACAGGCAATTGTGTCTATCAAAAAAGGTGCATATTTACTTAAGTGTGGTCGTAGAGGAAAGCCGAAGCTCTGCCCTTTCAGACTTTCCCAGGATGAGAGAAATTTGATTTGGTATTCAGGACAGCAGGAAAAGCATTTGCGATTGAGTGTAGTTACAAAAATTGTTCAAGGGCAAGAAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGCAGTGCCATTCGTTTTCGCTAATCTATGCTAACGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTTATATCTAGGTGTCAGCATCCTCGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGGGTTCAGAGTTGTGTTAGTAGTCCTGCTGGAATCTTACGAAGAAAGAAAAATCTTGGCCTTCTGGATGATACCTCTCAGTTTACTCAGGTGCATAGCTTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGTACTTCTGATAACTTGTATTCATCCACGTCTTTCCCCTCCAGCACTCATGGTGTAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAGATGTTCATAGTAACATTGAGTCAGCTCGCATTGATAAGGAGCACAAGAAGAATTTGTCCTATAGGAATTTGATGCATTCTACCTCTGCACGTTTAGGAAAAAGTAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAAGGTGGGGTCTATTCTTTAGTGCCAAAGTTACTAGAATCCACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAGCAAGGGGAAGTTTTTTGTTGGGGTCAAGGACAGTGGGGAAAATTGGGACAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTTGATTCACTTAATGGTCTTCATGTAAAACATGCTTCTTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGTTGTGCAGATTTGTTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCGCAAAAACTTGGCGGATCCTTAGATGGTATTATTATCTCAAGTATTGCTTGTGGAGAATGGCACACTGCGATTGTCTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTGTTCAAGTCCAAAAGAAGTTGAATCTCTTAGTGGACTGCGGGTGAGGTCTGTTGCCTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCTGATTATGGAAGCAAGCTTGTACCAACATGTGTTACACAACTTGTGGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACAAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAGTTAGGAAATCCACATGCCAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAATTATATCAACTGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTATACATGGGGCAGGGGTGAAAATGGCCAACTGGGGCTAGGTGATACTGAAGATAGATATACACCTTGTTTTGTTGAGACTCTTAGAGATAGACAGGTAAATACTATCACTTGTGGTCCAACCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGTCGAGCTTGTAGTAGTAAAAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCTGTAATGCCATCAAAGTCCAGAAATTTCAACAGTCAACAGCTGTTGAAGCATCAACAAAAAATTGCTGATGTGACTGAAGACAGGGGAGAGACAACCGTGACACAAGGTCCTTTACTATCACTAGGGCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTTGAAGATAGTTCTTCTATGCTAGGTGGAATGCCACAATGGGGGCAAGTTCCATGTCCTGCCATATTTAAAATTAATTGTACAGAAAATCCAGTTCATGTTTCTTCATCCAAGAATAAACTAGCCACAGTTTCTTCTTTTAATGTGGAATCTACAACATGTAACTTCTCTAATGTACAGACAGATACAACAAAGTCTGACAAGATGCTCCTCGAAGAAGTTCATAGATTGAGAGCCGAGGCTAAGAGACTTGAAGAGCAGTGTGAGCTTAAAAATCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCAAAGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATAACTCTGGACAAGAAGCAAAAGTTGGACAACGTGAATATGTTCCTAATGTAACACCTATAGTTACAGATGTGAAGAGTCCAAGAGATGGCAATATGGACAGTCTATCCAATTCTCCTATAGTATTTTCTGACACATTAAAATCCAAATTTGGGAGAAGCATGCTCCCCAAAAATCAAACTTCTAATTTAAATAGAGCAGAATCTCAACCAGACAATGGCTTCAAGGCCGAATGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTACCATGTGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGCAAGCGATTCTCGGAGAAGGAAGCTGAAAAATGGTGGGAAGAGAATCAAGGCACAGTGTATCACAAGTATGGGATTGAAGGATATACAAATACCAGCCAAAATCAGGTGAAAGGCTAA 3204 0.4082 MTMEEESLATVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQENIRSQRQNEPEKQCHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSLCASPTLSLSERCFSDGLSCTSDNLYSSTSFPSSTHGVTDNSVPSSPYIDPDVHSNIESARIDKEHKKNLSYRNLMHSTSARLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGQWGKLGQKIDMDISSPKIVDSLNGLHVKHASCGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGSLDGIIISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSCSSPKEVESLSGLRVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHSDYGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKIISTGSYHVAVLTSAGSVYTWGRGENGQLGLGDTEDRYTPCFVETLRDRQVNTITCGPTFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSVMPSKSRNFNSQQLLKHQQKIADVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNHPESQQDVEDSSSMLGGMPQWGQVPCPAIFKINCTENPVHVSSSKNKLATVSSFNVESTTCNFSNVQTDTTKSDKMLLEEVHRLRAEAKRLEEQCELKNHKIQECQQKIEESWFVAKEEAAKCKAAKEVIKALALRLHTISGKDNSGQEAKVGQREYVPNVTPIVTDVKSPRDGNMDSLSNSPIVFSDTLKSKFGRSMLPKNQTSNLNRAESQPDNGFKAEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQGTVYHKYGIEGYTNTSQNQVKG 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00286 1067 Coils Coil 852 886 - -
Spst6g00286 1067 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Spst6g00286 1067 SMART fyve_4 646 715 IPR000306 GO:0046872
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Spst6g00286 1067 Pfam Transcription factor regulating root and shoot growth via Pin3 997 1052 IPR013591 -
Spst6g00286 1067 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Spst6g00286 1067 Gene3D - 16 133 IPR011993 -
Spst6g00286 1067 SUPERFAMILY RCC1/BLIP-II 266 648 IPR009091 -
Spst6g00286 1067 Gene3D - 235 388 IPR009091 -
Spst6g00286 1067 Gene3D - 389 482 IPR009091 -
Spst6g00286 1067 Gene3D - 485 653 IPR009091 -
Spst6g00286 1067 MobiDBLite consensus disorder prediction 770 784 - -
Spst6g00286 1067 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Spst6g00286 1067 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Spst6g00286 1067 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Spst6g00286 1067 CDD PH_PLC_plant-like 15 127 - -
Spst6g00286 1067 SUPERFAMILY FYVE/PHD zinc finger 653 722 IPR011011 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Spst6g00286 1067 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Spst6g00286 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Spst6g00286 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Spst6g00286 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Spst6g00286 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Spst6g00286 1067 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Spst6g00286 1067 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 915 - -
Spst6g00286 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 722 IPR013083 -
Spst6g00286 1067 MobiDBLite consensus disorder prediction 769 791 - -
Spst6g00286 1067 SUPERFAMILY PH domain-like 16 126 - -
Spst6g00286 1067 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00286 Spst-Chr6 2863076 2870721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00286 993 1057 Major Intrinsic Protein MIP AT1G31880 46.154 1.37e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00286 - - gmx:100797223 1957.57