Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00284 ATGATTTGTGTCTCTTTGCCATCGCTTGTAGCAACGAAACACAAATCAATGTCACAACAAACACTAACCGTTCTTCTTTTTCTTCAATTCACATTCTTCATTTCTTCACCAGTCACAAGTTTATACTCTCCTTCACCTCCCGCCGCGCCGTTTTCCCAGACTACCCCTGACCCCGGCTTTTCTCCACGCGCCGAGTGGCTCTTCGCCCACGCCACGCACTACGACGCCACCGACACGCTCGGCGGAGCCTGCGGTTACGGCGACCTCCCCAATGGCATGGCCACCGCCGCCATCAGCCAAGCCCTCTTCGACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCGCGAGGAGGACACCGACTTCGACCGCCGATGGTGCATCTTCGGCGCGTCGGTCGCTGTCACCGCCGCCAATTTCTGCGCCCCGAACTACGGGTCCGACGCCGAGAGCCTCGGCGGACATTGTAACCCTCCGAAGCAGCATTTTGTTATCCCAATTGAAGTTTTCGAGAAAATCGCAATCTGGAAGACTGGCACTGGCAACATGCCAGTGCAGTATCGCAGGATAAAGTGCAAAAGAGAAGGGGGAATGCGGTTTACAATTACTGGTTCTGGAATCTTCATTTCGGTGCTGATCAGTAATGTGGGTGGGATGGGAGACATTGTGGGAGTGAAGGTGAAGGGTTCAAAAACTGGTTGGCTTTCTATGGGTAGGAATTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAGCCTCTTTCTTTTGAGGTCAAGGGTAGTGATGGAATAGCTGTTACATCTTACAATGTTGCCCCCAAGAATTGGACTTTTGGACAATCTTTTGAAGGAAAGCAGTTTGAGCATTGA 882 0.5261 MICVSLPSLVATKHKSMSQQTLTVLLFLQFTFFISSPVTSLYSPSPPAAPFSQTTPDPGFSPRAEWLFAHATHYDATDTLGGACGYGDLPNGMATAAISQALFDRGQICGACFELRCREEDTDFDRRWCIFGASVAVTAANFCAPNYGSDAESLGGHCNPPKQHFVIPIEVFEKIAIWKTGTGNMPVQYRRIKCKREGGMRFTITGSGIFISVLISNVGGMGDIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVKGSDGIAVTSYNVAPKNWTFGQSFEGKQFEH 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00284 293 Gene3D - 199 291 IPR036749 -
Spst6g00284 293 PRINTS Expansin signature 90 104 IPR002963 GO:0009664
Spst6g00284 293 PRINTS Expansin signature 155 172 IPR002963 GO:0009664
Spst6g00284 293 PRINTS Expansin signature 198 210 IPR002963 GO:0009664
Spst6g00284 293 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Spst6g00284 293 PRINTS Expansin signature 245 266 IPR002963 GO:0009664
Spst6g00284 293 PRINTS Expansin signature 274 290 IPR002963 GO:0009664
Spst6g00284 293 SUPERFAMILY PHL pollen allergen 196 288 IPR036749 -
Spst6g00284 293 Pfam Expansin C-terminal domain 200 277 IPR007117 -
Spst6g00284 293 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 199 IPR007112 -
Spst6g00284 293 PRINTS Expansin/Lol pI family signature 65 80 IPR007118 GO:0005576
Spst6g00284 293 PRINTS Expansin/Lol pI family signature 182 198 IPR007118 GO:0005576
Spst6g00284 293 PRINTS Expansin/Lol pI family signature 274 288 IPR007118 GO:0005576
Spst6g00284 293 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Spst6g00284 293 SUPERFAMILY Barwin-like endoglucanases 65 217 IPR036908 -
Spst6g00284 293 Pfam Lytic transglycolase 95 189 IPR009009 -
Spst6g00284 293 Gene3D - 53 195 IPR036908 -
Spst6g00284 293 SMART dpbb_1 95 189 IPR007112 -
Spst6g00284 293 CDD DPBB_EXPA_N 65 194 - -
Spst6g00284 293 PANTHER EXPANSIN-A15 34 291 IPR002963 GO:0009664
Spst6g00284 293 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 209 288 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00284 Spst-Chr6 2846517 2848171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00284 65 292 Expansin Gene Family AT3G03220 67.949 2.03e-112 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00284 - - gmx:100790211 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00284 6 2846517 2848171 Spst6g00284 6 2846517 2848171 ECH