Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00283 ATGGCGATTCAAGATCAAAATGGATTTAACAGATCACAGGGTGGTCCTTCGGAAGGAAGTGGAGTCTCTCTGAGTTCTGGAGTGCATTCTGTTGCACATATTCAACTTAATGACCAGTTTTCTTGTGGGAATGACTATGCCCTGAAGGTAAGGAAGCCGTATACTATCACGAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTCCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCGTACTGGGAGTGTTACAAATACAGTGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCTAGAAAGCTAGTTGAGACTCCTAGTAAGGAAACTTCAATTGCAGAACAACTAATGAAGTCTAGTTATCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGGGGTTTCAGATAGCCTTGGCTCCTCAGATTCAGACACACCAAATGGAAGTTTGTCGCCCATGTCATCCATCAGTGGCATCCATACAAGCGGTTTTACATGTGCCGAACCCAACACAACATCCGAAGAAGCTGGGATAAACGCTGATTCATCTCATGATGAGAAGAAACCTCATATGAAATTCAAGCTTCCTACAAACCAAAGCGATTACATCAAAGAAGACATAACAGAAGAATCTTCAGGCCAGACTTTCAAACTTTTTGGAATGACATTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAACAATCGAGGCATGCAAACCAATACCTCTAAACATACGCAAGGGGGATGGAACATTGGAACTTCTTGGCCACATCACATCAAGTGAAACATCAGCCATATCCCTGCTAAAGGTGAGAATGGGTCCTGAAACATGTGGGAAAGGGTTTGTGCCATATAAAAGGTGCATGGAAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATAATAGAGAAGAGCAATGCATCCACCTTTCGTTGTAG 1089 0.4261 MAIQDQNGFNRSQGGPSEGSGVSLSSGVHSVAHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDRTGSVTNTVESIEIPPPRPKRKPMHPYPRKLVETPSKETSIAEQLMKSSYLKSSDFDQENQSPKSVLSGGVSDSLGSSDSDTPNGSLSPMSSISGIHTSGFTCAEPNTTSEEAGINADSSHDEKKPHMKFKLPTNQSDYIKEDITEESSGQTFKLFGMTFFVTDTCKPSSPTIEACKPIPLNIRKGDGTLELLGHITSSETSAISLLKVRMGPETCGKGFVPYKRCMEGRENQSSSVTNDNREEQCIHLSL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00283 362 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Spst6g00283 362 MobiDBLite consensus disorder prediction 164 226 - -
Spst6g00283 362 Gene3D - 62 108 - -
Spst6g00283 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Spst6g00283 362 MobiDBLite consensus disorder prediction 126 143 - -
Spst6g00283 362 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Spst6g00283 362 SMART sant 59 107 IPR001005 -
Spst6g00283 362 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Spst6g00283 362 MobiDBLite consensus disorder prediction 1 24 - -
Spst6g00283 362 PANTHER SWI/SNF COMPLEX-RELATED 43 270 - -
Spst6g00283 362 MobiDBLite consensus disorder prediction 120 151 - -
Spst6g00283 362 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Spst6g00283 362 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Spst6g00283 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Spst6g00283 362 MobiDBLite consensus disorder prediction 164 240 - -
Spst6g00283 362 CDD SANT 62 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00283 Spst-Chr6 2842800 2844981 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g00283 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00283 - - gmx:780539 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00283 6 2842800 2844981 Spst6g00283 6 2842800 2844981 ECH