Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst6g00282 | ATGGGTTTAGCAATAAGGCTGAGGCTATGGTTGTTTGTGCATCTGGAAACAGAAATGGGTTCTTGGGCTACAGTATCTGTTCTGACTATTCCATGGGATCATTATAAACTTAGGAGTATTGGTGTGATTAAGTCAAGCCAAGATGTATCTTATTTTCAAACCAAACAACAAGTAGGAACTTGGGAAGAACCAGATACTGGAAGTGACAGTGAGTCTGACGATGAGGAAGTTGAACAGGCAAACTTAGTGTTTGAAAGTAATTTTGAAGAGGAAGGGATGAAGACTTCAGTTGTTGCTGATGTTAATAACATAACTTCAAGGGACAAATATGAAGAACTTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAGCAATATTGGAACAGAATGTTACTCCTAACTTGGAAAAAATTTCAACTGCAAAATGGAGCCCGCTGCACACTCTTGTGCTATCGATGCAGATGAGTTGTGTGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTACCTGATAAGGACGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGATACTTTGGTTAGCCATCTTTTACGGAGACGTGCAAGTCCACATGTTAAGGATAAGGATGGAGCCACTCCACTTCATTATGCAGTCCAAGTTGGTGCCAAGATGACTGTTAAATTATTGATTAAGTACAAGGCTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATATAGGAAAAATTTTGTTAGTCAACGGTGCTGATAAAACAAGAAAAAATAAGGACGGAAAAACAGCCCTGGATCTAAGCTTATGTTATGGGAAAGATTTTAAGTCTTATGACCTTGCCAAATTACTGAAGACGGTTCCAGCTGATAGCTGTCTATGA | 930 | 0.386 | MGLAIRLRLWLFVHLETEMGSWATVSVLTIPWDHYKLRSIGVIKSSQDVSYFQTKQQVGTWEEPDTGSDSESDDEEVEQANLVFESNFEEEGMKTSVVADVNNITSRDKYEELIKKEVEQLLEPEERAILEQNVTPNLEKISTAKWSPLHTLVLSMQMSCVDKLLENGVDIDLPDKDGLTALHKAIIGKKDTLVSHLLRRRASPHVKDKDGATPLHYAVQVGAKMTVKLLIKYKADVNVEDNEGWTPLHVAIQSRNRDIGKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLAKLLKTVPADSCL | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst6g00282 | 309 | SMART | ANK_2a | 144 | 173 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | SMART | ANK_2a | 276 | 309 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | SMART | ANK_2a | 210 | 239 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | SMART | ANK_2a | 243 | 272 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat region circular profile. | 210 | 242 | - | - | |
| Spst6g00282 | 309 | Pfam | Ankyrin repeats (3 copies) | 243 | 300 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | Pfam | Ankyrin repeats (3 copies) | 158 | 241 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | Gene3D | - | 108 | 210 | IPR036770 | - | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat profile. | 243 | 275 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 117 | 301 | - | - | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat profile. | 210 | 242 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | Gene3D | - | 211 | 292 | IPR036770 | - | |
| Spst6g00282 | 309 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat region circular profile. | 243 | 269 | - | - | |
| Spst6g00282 | 309 | SUPERFAMILY | Ankyrin repeat | 136 | 300 | IPR036770 | - | |
| Spst6g00282 | 309 | ProSiteProfiles | Ankyrin repeat profile. | 144 | 176 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst6g00282 | 129 | 275 | Ion Channels | AT2G25600 | 26.404 | 4.24e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst6g00282 | - | - | gsj:114380843 | 462.611 |