Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00263 ATGCCTGCTGTCACATCAATACGAAGGAACGGATCAGATTTTAAGGTTGTTGTGTTTTGTGTTTGTGAGCTATGGAGTGAGTGCATTGGCTTCATGGTGGAGGAGGAGGGTGTTGTTGGGGAATGCTTGCATATGCATGGCTTGAAGCAAATTGAGGAAAAACAAAAGAAGGTAAAGCTTGATGATATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCCTGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATATGTCAACTTCACAATGTCACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACGGCCAGCGACACCAGTACACATGGAGGATTCTCTGTTCCTCGACGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCCCAGCAGCCACCAGCACAGGAACTAATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCGTCATCAGTTTTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCGACCAATAGCTGTTTTACTGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTTGTGATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACACGCATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACGGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGACTTGGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCGCGAGTATCTCTCTGGGAAATTGAGCCATTAACAACATTCCCCATGTATCCGTCACTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCATCGTCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAGGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGATTAGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAACTGGCTTGCAGAATCTAGGTAGTGGATATCTTATGAAGCAACAAATGATGAATTTTCAACAGCCTTTTCACTATCTTCAGCAATCAGGAAACAGCAGTTCTCCTTTGCAACTTCAGCAGCAGCAATCAATTCAACAATCGGTGTCTTCTAACATGCTGCAGCCACAGGCCCATGTATTGACAGAGAACCTCTCTCAGCATCTGCTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACTCGCCCTTAATTCCAAGTGGCCAGCTCCACCCGAGACAGCACTCTAGCGTTCCTTCACCATCATATTCAAAACCAGATTTCTTGGATTCAAGCGTGAAGTTCCTTGCTTCAGTTTCCCCCGGACAAAACATGCTTAGTTCTCTTTGTCCTGAAGGAAGTGGAAGTCTCGCGAATTTATCAAGAAGCGGTCCATCCTTGCTGACTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAGGCACTGTGTCACAGACACAATATTCTGGAAAAGATTCTACAATGGTGCTACAACAGTGTAACTCAGATGCCCAGAATTCAACACTCTTTGGTGTCAATATTGATTCATCTGGCCTTCTCCTTCCCACCACAGTCCCTGGTTACAGCACCCCATCTGCGGATACTAATTCTTCTACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCACTATTTGGTTGCATGCAAGATTCGTCAGAGTTATTGCAAAGTGCAGGGCATATTGACCCACAAAACCAGACTCAAACCTTTGTCAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGGGAGGAATTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGGGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAGATACTCTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTGAATGGGGCTGGTGCTGAGTCTCAGGACATTGTTTCTGGTCCACCATCAATTGGATCACTTGAGTACTGA 2718 0.4588 MPAVTSIRRNGSDFKVVVFCVCELWSECIGFMVEEEGVVGECLHMHGLKQIEEKQKKVKLDDMKLSTSGLGQQGLEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDLVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGSDQNQQYQAMLATGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSSSPLQLQQQQSIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSPLIPSGQLHPRQHSSVPSPSYSKPDFLDSSVKFLASVSPGQNMLSSLCPEGSGSLANLSRSGPSLLTEQLPQQQWTQKYAPVQVNAYGGTVSQTQYSGKDSTMVLQQCNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTPSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHIDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGAGAESQDIVSGPPSIGSLEY 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00263 905 MobiDBLite consensus disorder prediction 883 905 - -
Spst6g00263 905 Gene3D - 188 291 IPR015300 -
Spst6g00263 905 SMART B3_2 190 292 IPR003340 GO:0003677
Spst6g00263 905 ProSiteProfiles B3 DNA-binding domain profile. 190 292 IPR003340 GO:0003677
Spst6g00263 905 SUPERFAMILY DNA-binding pseudobarrel domain 174 319 IPR015300 -
Spst6g00263 905 CDD B3_DNA 189 290 IPR003340 GO:0003677
Spst6g00263 905 SUPERFAMILY CAD & PB1 domains 773 853 - -
Spst6g00263 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 79 868 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst6g00263 905 FunFam Auxin response factor 188 292 - -
Spst6g00263 905 Pfam B3 DNA binding domain 190 291 IPR003340 GO:0003677
Spst6g00263 905 MobiDBLite consensus disorder prediction 532 556 - -
Spst6g00263 905 Gene3D - 775 868 - -
Spst6g00263 905 FunFam Auxin response factor 354 426 - -
Spst6g00263 905 Pfam AUX/IAA family 776 863 IPR033389 -
Spst6g00263 905 ProSiteProfiles PB1 domain profile. 779 863 IPR000270 GO:0005515
Spst6g00263 905 Pfam Auxin response factor 316 399 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst6g00263 905 FunFam Auxin response factor 774 868 - -
Spst6g00263 905 MobiDBLite consensus disorder prediction 580 618 - -
Spst6g00263 905 Gene3D - 354 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00263 Spst-Chr6 2630982 2638303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00263 160 871 B3 DNA Binding Superfamily AT5G37020 67.729 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst6g00263 AUX_IAA 9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00263 - - gmx:100784373 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00263 6 2630982 2638303 Spst6g00263 6 2630982 2638303 ECH