Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00239 ATGCGCGAAACTAGGGTGAAGAATGCAGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAAGCTACCGTAGATGCTGGAACCATTGCTGGCCTTAACATTTTGCGGATAATCAATGAACCAACTGCTGCAGCTATTGCATATGGCCTTGACAGAAGGACTAAGTGTGTTGGAGAGAGAAACATTTTCATCTTCGATCTTGGTGGTGGTACTTTTGACGTTTCTCTCCTTACAATTAAGGGTAAGATCTTTCAAGTTAAGGCCACCGCTGGAAACATTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTGAACTACTTTGTGGAGAAAATCAAAATGAGAAACAAAGTGGACATTAGTGGAAACCCAAAAGCGCTAAGAAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGAACACTCTCACATGCTCTTACTACCAACATTGAGGTAGATAGTTTATCTCATGGCATTGACTTCTCTTCTTCAATCACTCGTGCAAGGTTTGAGGAAATCAACATGGAGCTCTTTAACGAGTGCATGGAGACTGTAGATAGGTGTCTGGCTGATGCTAAGATGGACAAGAGCAGTATACATGATGTTGTTCTTGTTGGGGGGTCTTCTAGGATTCCCAAAGTGCAAGAGCTATTGAAAGACTTCTTTGATGGAAAGGATCTGTGCAAGAGCATAAACCCTGATGAAGCTGTTGCCCATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAGACATGGTGCTGTTGGATGTTACACCGTTGTCACTTGGTATCGATACAATAGGAGATATCATGAGCGTAATTATTCCTAGAAATACTAGTATTCCTGTAAAGAGGACACAAGTATATCGTGCAGATGAAGATAACCAATCATCTGTTCTAATTGAGGTTTACGAGGGTGAAAGAACAAGAGCTAGAGATAACAATTTGTTGGGTTCTTTTGAGCTTTCTGACTTTCCTCCGGCTCCTAGAGACCATCCTTTTGAGGTCTGCTTTGCCATAGATGAAAATGGTATCCTATCTGTCTCTGCTAAGGAAAAAACCACTGGCATCATGAATAAAATTGTCATAACCAATGACACAGAAAGACTTTCGACGGAACAAATCCATAGAATGATACAAGAAGCAGAGGAATACAAAGCTGAAGATTTGAAATTCCTGAAGAAGGCCACACTGCAGTGA 1221 0.421 MRETRVKNAVVTVPAYFNDSQRKATVDAGTIAGLNILRIINEPTAAAIAYGLDRRTKCVGERNIFIFDLGGGTFDVSLLTIKGKIFQVKATAGNIHLGGEDFDNRMVNYFVEKIKMRNKVDISGNPKALRRLRTACERAKRTLSHALTTNIEVDSLSHGIDFSSSITRARFEEINMELFNECMETVDRCLADAKMDKSSIHDVVLVGGSSRIPKVQELLKDFFDGKDLCKSINPDEAVAHGAAVQAALLSEGIKNVPDMVLLDVTPLSLGIDTIGDIMSVIIPRNTSIPVKRTQVYRADEDNQSSVLIEVYEGERTRARDNNLLGSFELSDFPPAPRDHPFEVCFAIDENGILSVSAKEKTTGIMNKIVITNDTERLSTEQIHRMIQEAEEYKAEDLKFLKKATLQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00239 406 PANTHER HEAT SHOCK PROTEIN 70KDA 7 395 IPR013126 GO:0005524|GO:0140662
Spst6g00239 406 ProSitePatterns Heat shock hsp70 proteins family signature 2. 66 79 IPR018181 -
Spst6g00239 406 SUPERFAMILY Actin-like ATPase domain 4 54 IPR043129 -
Spst6g00239 406 Gene3D - 4 247 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 258 277 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 338 354 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 9 29 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 72 82 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 200 216 - -
Spst6g00239 406 PRINTS 70kDa heat shock protein signature 232 252 - -
Spst6g00239 406 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 255 402 IPR029047 -
Spst6g00239 406 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 249 406 IPR029047 -
Spst6g00239 406 Gene3D Actin; Chain A, domain 4 99 181 - -
Spst6g00239 406 Gene3D - 55 229 - -
Spst6g00239 406 FunFam Heat shock 70 kDa 253 405 - -
Spst6g00239 406 FunFam Heat shock cognate 70 kDa protein 2 182 229 - -
Spst6g00239 406 SUPERFAMILY Actin-like ATPase domain 61 250 IPR043129 -
Spst6g00239 406 ProSitePatterns Heat shock hsp70 proteins family signature 3. 203 217 IPR018181 -
Spst6g00239 406 Pfam Hsp70 protein 4 400 IPR013126 GO:0005524|GO:0140662
Spst6g00239 406 FunFam Endoplasmic reticulum chaperone BiP 2 64 - -
Spst6g00239 406 FunFam Heat shock 70 kDa 98 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00239 Spst-Chr6 2487042 2488443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00239 6 402 Calmodulin-binding Proteins AT3G12580 71.429 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00239 K03283 - gmx:102667572 634.024