Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00228 ATGGCTAGGAGACTTTGTGTGTTGACTCTTGATGTCATAATCGAAATTCTTGCCGTGGCAACCTGGTCTCACAGACAAGACCATGCCCACGAACCATTGCCCACTGTGACGCCCTTTCACTTTCATCTTCTTGGTGAAGCACAGTTGGACGGAAAAGTACACTGCTTTGTTCATGAGAGATATTTGAGAGTTCTAGTGTTCATACTTGGGATGTATCTTTCAAAGAGTTTCAGGCTTGAAGTTGTTGTCATCCTGTGGTTTTGCTGCTATATGCTACATGCCGCTGGGCAGAATAACATCACAAATTCTGTCGAAGTTGAAGCATTGAGAGCCATTAAGAATAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATCATGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTACAATGGAACCAAAGAGGATGGCTATCTTCATGTTGAAGAATTGCAATTACTGAATTTGAACTTGTCTGGAACTTTGGCACCAGAACTTGGCAAATTACCATACATGAAAAGATTGAACTTTATGTGGAATAACATAAGTGGCAGTATTCCGAAGGAAGTTGGCAATATCACATCTTTGGAACTCTTGCTCCTGAATGGAAATAATTTATCTGGTCAACTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATCGATCAGAACCATATATCAGGACCTATACCTACGTCATTTGCAAATCTGAACATGACAAAGCATTTTCTTCTCGACAATAACAATTTATCTGGAAACCTCCCCCCTGAGCTGTACAAGATGCCAAGCTTACTTATCATTCAACTTGATAACAATAACTTTGGAGGAAGTAGTATTCCTGATACATATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGCTTGCGAGGACCAATTCCTGATTTAAGCAGGATACCTAATCTTCTTTATCTTGACCTCAGCTTCAACCAGTTGAATGAATCGATTCCTCCCAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACCGCCTTACTGGAAATATTCCATCCTACTTTGCTGATCTTGCAAATCTTCAGAAATTGTCACTTGCAAACAATTCATTGAATGGCAGTGTTTCTTCCTCCATTTGGCTGAATAAAACTTCAAATGGAACAGACAACTTTTTCTTGGAGTTGCAAAATAATAATCTTACGACCATATCAGGCAGTACTGATCTTCCTTCAAATGTCACAGTTGGGCTTGATGGGAATCCCCTTTGCTCAAACATATCCCTGGTTCAGTTCTGTGGATCTGAAGGTGCTACTGTAACAAATGGCTCATTTACTACAAACTCCAGTTTCTGTCCTCCTCAAGCATGCCCGCCTCCTTACGAGTACTCTGAGAATTGTTTCTGTGCCCTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGGTTTTCAGACTTTACTCCATTTTTAAAAGAATTTGAGAACTACATGACTACTGGTCTTGAAATATCTACTGATCAGCTAGAATATGATTTTTATTGGCAAGTAGGACCTCGATTAAGAATGGACTTGAAGTTTTTTCCTCTATTTGTTAATAGCACTAGCAATCATACTTTCAATACAAGTGAGCTCCTACGGATCACAAGCAAGTTTACAGGATGGCTAATTCCGGACAGTGATCTGTTTGGGCCTTATGAACTGCTTGGCTTCAATCTTTTGGGTCCTTACAAGGATGATGGTATTAGAGCTTCAGCTCTAAACTCTTTTATCCATGGAGAAGATGATGATGATTGGTGCTTCCGCACACACATCCAACACCTTGACAGAGCCTCCAAGAAACACGAAATTGGCAAGAGTTCAAAATCAGGGATAAGTACGGGTGCACTGGTTGGCATAATCATAGGGGCAATAGCCTGTGCAGTGACATTATCTGCAATTGTTACCATTCTTATATTGAGAATAAAATTGAGAGATTATCATACTGTTTCCAAGCGACGTCATGCATCTAAGATCTCTATAAAAATTGATGGCGTAAGGGCCTTTACTTATGTAGAATTGTCCTCCGCCACAAACAATTTCAGCATTTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAAAGGCATTCTTTCTGATGGCACAGTTGTTGCCATAAAACGTGCACAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTGTCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATATTGTGATGAAGAAGGTGAACAGATGCTCGTCTATGAATTTATGTCTAATGGTACGTTGAGGGATCACCTTTCAGTGACAGTTAAAGAACCTCTGACTTTTGCCATGAGATTGAAGATCGCACTAGGGGCAGCTAAAGGTCTTACGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTGTTGGACTCTAAGTTTTCAGCGAAAGTGGCTGATTTTGGACTTTCACGTCTTGCCCCAGTTCCTGATATGGAAGGGGTTGTGCCTGGTCATGTATCTACCGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATCTTGCGTACCAATCAGGTGTAATATTTTCAATTATCGATGGACGTATGGGATCTTATCCATCTGAGCATGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTTGTGATGATGAGCCAGAGGCGCGGCCTAGAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAAAGAGCCGAATTTATATCCAGTGATTCTGGCAAAACAGACAGGCACAGTACACCATCTTCGTCCTCGGCTTCTACTATGAAAACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTCAGTGGAGTAATACCAAGCATCAAGCCAAGGTAG 3102 0.4101 MARRLCVLTLDVIIEILAVATWSHRQDHAHEPLPTVTPFHFHLLGEAQLDGKVHCFVHERYLRVLVFILGMYLSKSFRLEVVVILWFCCYMLHAAGQNNITNSVEVEALRAIKNSLIDPNGNLSNWNHGDPCTSRWKGVLCYNGTKEDGYLHVEELQLLNLNLSGTLAPELGKLPYMKRLNFMWNNISGSIPKEVGNITSLELLLLNGNNLSGQLPEEIGYLPNLDRIQIDQNHISGPIPTSFANLNMTKHFLLDNNNLSGNLPPELYKMPSLLIIQLDNNNFGGSSIPDTYANMSKLLKMSLRNCSLRGPIPDLSRIPNLLYLDLSFNQLNESIPPNKLSENITTIDLSNNRLTGNIPSYFADLANLQKLSLANNSLNGSVSSSIWLNKTSNGTDNFFLELQNNNLTTISGSTDLPSNVTVGLDGNPLCSNISLVQFCGSEGATVTNGSFTTNSSFCPPQACPPPYEYSENCFCALPLLVAYRLKSPGFSDFTPFLKEFENYMTTGLEISTDQLEYDFYWQVGPRLRMDLKFFPLFVNSTSNHTFNTSELLRITSKFTGWLIPDSDLFGPYELLGFNLLGPYKDDGIRASALNSFIHGEDDDDWCFRTHIQHLDRASKKHEIGKSSKSGISTGALVGIIIGAIACAVTLSAIVTILILRIKLRDYHTVSKRRHASKISIKIDGVRAFTYVELSSATNNFSISAQVGQGGYGKVYKGILSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTVKEPLTFAMRLKIALGAAKGLTYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNLAYQSGVIFSIIDGRMGSYPSEHVEKFLTLALKCCDDEPEARPRMAEVVRELENIWSTMPESDTKRAEFISSDSGKTDRHSTPSSSSASTMKTPFVSGDVSGSDLVSGVIPSIKPR 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00228 1033 Gene3D Ribonuclease Inhibitor 102 264 IPR032675 -
Spst6g00228 1033 SUPERFAMILY Protein kinase-like (PK-like) 685 990 IPR011009 -
Spst6g00228 1033 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Spst6g00228 1033 CDD STKc_IRAK 706 972 - -
Spst6g00228 1033 Gene3D Transferase(Phosphotransferase) domain 1 776 994 - -
Spst6g00228 1033 Pfam Protein tyrosine and serine/threonine kinase 702 969 IPR001245 GO:0004672|GO:0006468
Spst6g00228 1033 Gene3D Ribonuclease Inhibitor 265 338 IPR032675 -
Spst6g00228 1033 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 103 260 - -
Spst6g00228 1033 MobiDBLite consensus disorder prediction 981 1033 - -
Spst6g00228 1033 Gene3D Phosphorylase Kinase; domain 1 670 775 - -
Spst6g00228 1033 ProSiteProfiles Protein kinase domain profile. 700 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00228 1033 SMART serkin_6 700 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00228 1033 SUPERFAMILY L domain-like 103 436 - -
Spst6g00228 1033 MobiDBLite consensus disorder prediction 993 1014 - -
Spst6g00228 1033 Gene3D Ribonuclease Inhibitor 339 464 IPR032675 -
Spst6g00228 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Spst6g00228 1033 FunFam Leucine-rich repeat protein kinase family protein 664 775 - -
Spst6g00228 1033 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 776 985 - -
Spst6g00228 1033 PANTHER RECEPTOR-LIKE PROTEIN 55 112 973 - -
Spst6g00228 1033 Pfam Leucine rich repeat N-terminal domain 105 141 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00228 Spst-Chr6 2309469 2327845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00228 88 982 Receptor kinase-like Gene Family AT5G01950 55.854 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Spst6g00228 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00228 - - gmx:100786467 1543.1