Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00221 ATGAGTGAGACAAACCAACCTTTCATCTCCGTTCAACCAACCATGAAGCTCCACCACCCCTTTAACCCACCTACCCCAAGCTCAAATTTTGACACCAGCCCACCATGCAAAACCGCCAAAAAACTTCAACCACCGCACAAGAAGCTCCTCCGAGTCATCCTCACCGACCACGACGCCACCGACTCTGACTCCTCCGGCGACGATGAGGGCCCAAATATCCCTCCAAGACATAAAAAAGTGAAAAGAGAAATCACCCACATCACCATAAACCTTCCCTTTATAGCCCCAACACCAACGATTCCAACGGTAACTCCTTCTCCGTCTTTTCCCACTGACCCGACCCGTTTAACCCGGGCCCTTAAACAACCCGTCGTTCCTCGCCGCCGGAGCAAGTTTCGCGGCGTCCGACAGAGGCCCTGGGGGCGGTGGACCGCCGAAATTCGTGACCCGACCCGGAGAAAACGGGTGTGGCTCGGCACCTTCGACACCGCGGAGGAAGCCGCTGCTGTGTACGATGAGGCCGCAGTGAAGCTCAAGGGCCCCAACGCTGTCACCAACTTTCCCCTCGCCACAGCCGGAAAAACAGAACTCCACGTTTCACCTCCGGAGGCGGCCTCCTCCGGAGACGGTTTCGCGTCGCCGACGTCTGTCCTCGCCTATTGCGACGGAGACTCAACGCCGTTCGACGGCTTCCGATACGGCGAGGTCGATGCGTTTGGTTTTGACATCGACGCACCGTTTGGTTTGACAGACGTTAACTTGGGCGTGCTGAGTCAGCGCTTCGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCGAATTAA 840 0.5726 MSETNQPFISVQPTMKLHHPFNPPTPSSNFDTSPPCKTAKKLQPPHKKLLRVILTDHDATDSDSSGDDEGPNIPPRHKKVKREITHITINLPFIAPTPTIPTVTPSPSFPTDPTRLTRALKQPVVPRRRSKFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLATAGKTELHVSPPEAASSGDGFASPTSVLAYCDGDSTPFDGFRYGEVDAFGFDIDAPFGLTDVNLGVLSQRFAKEEFGEFDPDEFLTWPN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00221 279 PIRSF PTI6 19 279 IPR017392 GO:0003700
Spst6g00221 279 MobiDBLite consensus disorder prediction 21 36 - -
Spst6g00221 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 219 - -
Spst6g00221 279 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Spst6g00221 279 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Spst6g00221 279 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Spst6g00221 279 MobiDBLite consensus disorder prediction 1 77 - -
Spst6g00221 279 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Spst6g00221 279 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Spst6g00221 279 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Spst6g00221 279 Gene3D AP2/ERF domain 130 190 IPR036955 GO:0003700|GO:0006355
Spst6g00221 279 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Spst6g00221 279 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00221 Spst-Chr6 2250349 2251188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00221 48 220 AP2-EREBP Transcription Factor Family AT4G27950 42.391 4.77e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g00221 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00221 K13434 - gmx:102660028 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00221 6 2250349 2251188 Spst6g00221 6 2250349 2251188 ECH
Spst6g00221 6 2250349 2251188 Spst8g00244 8 2143472 2144323 PCT