Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00218 ATGTCGTATGTACCTCCACACCTCAGAAATGCCACTTCCACCACTATAGCTACTGCCAGAATACCCTCCATAACCGTAGACAACAATCACCACAACAACAACCACCACAAGCTCGCATTCACCTCCAACAACAACACAAACGCCAATTGCTCTCCCTCGCTACCCTCCTTCCACAGTGCCTCTCGCCGGAGCTCTGTCGCACCTCCATCGTTGCGGATTCTCGCCTCCCTTGACCCAGTCTTCCCACAATGGCAGCCCTCCGAACGCGCTTCGCGCATGACTCCGAAGCAGATTGAAGAGGTTCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATTGTACTCTCCTCCTGCACCTGCACCAATAGAATCATTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTACCACGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCCCTCAGTGGAAGAGATCTATTGGGTTGTGCTGAAACCGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCTCAAGCTTCAATTAGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAGCAAATAGAAAAAGAGGTTAAAGCTTTTAGTAGATCTCTCGAGTCATTGAAAACTGCTATAGTTGTGGGTGGAACTAACATTGAAAAACAGAGGTCTGAACTTAGAGTTGGAGTTGAAATAGCAGTTGCCACGCCGGGAAGATTCATTGATCACTTACAACAAGGAAATACTTCTCTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTGGACATGGGTTTCGAACCGCAGATAAGAGAGGTAATGAGAAATCTTCCTGAGAAGCATCAAACACTGCTTTTTAGTGCTACAATGCCCGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGTCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTTTGAAAATGAGAAGATTGATCGACTTTTAGATTTACTTGTAGAGGATGCATCTCAGGCTGAAAAATGTGGTCATCCATTTCTATTAACAATTGTATTTGTTGAGAGAAAGACAAGGTGCGATGAAGTTGCTAAAGCATTGATAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGTAGTCAGAGTGAAAGAGAGTCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCTCATGTCATCAATCTAGATCTTCCTAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCGTTTTACACTGATCGTGACATGTTTCTTGTGGCAAATATAAGGAAGGCAATAGCTGACGCAGAATCTGGGAACACATTGACATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCACAAAAAGAGGCAAATATTGATTTATCCAAACAGCTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTCATGATTACTTCTACAAACACTAAAAGAGAGGGTGCAGCAGATAGTGCCTGGGATGATTAA 1704 0.4425 MSYVPPHLRNATSTTIATARIPSITVDNNHHNNNHHKLAFTSNNNTNANCSPSLPSFHSASRRSSVAPPSLRILASLDPVFPQWQPSERASRMTPKQIEEVRSRLNLDVTVALYSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQASIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRVGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKIFENEKIDRLLDLLVEDASQAEKCGHPFLLTIVFVERKTRCDEVAKALIAQGLSAVSLHGGRSQSERESALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAQKEANIDLSKQLGLGAASINIEDKYKFMITSTNTKREGAADSAWDD 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00218 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 491 IPR027417 -
Spst6g00218 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 330 IPR014001 -
Spst6g00218 567 CDD DEADc 134 331 - -
Spst6g00218 567 CDD SF2_C_DEAD 342 480 - -
Spst6g00218 567 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Spst6g00218 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 512 IPR001650 -
Spst6g00218 567 Pfam Helicase conserved C-terminal domain 354 471 IPR001650 -
Spst6g00218 567 Gene3D - 83 334 IPR027417 -
Spst6g00218 567 Pfam DEAD/DEAH box helicase 147 317 IPR011545 GO:0003676|GO:0005524
Spst6g00218 567 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Spst6g00218 567 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 523 - -
Spst6g00218 567 SMART ultradead3 142 350 IPR014001 -
Spst6g00218 567 Coils Coil 512 532 - -
Spst6g00218 567 SMART helicmild6 390 471 IPR001650 -
Spst6g00218 567 Gene3D - 336 529 IPR027417 -
Spst6g00218 567 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00218 Spst-Chr6 2218183 2225371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00218 123 493 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 1.29e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00218 K12823 - gmx:100818387 986.867