Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00217 ATGTCGTATGTACCTCCGCACCTCAGAAATGCCACTTCCACCACCGTTTCCACTGCAAGAACCCCCTCCGTAATCATAGACAACACTCACCACAACAACAACCACCATCACAAGCTCGCACTCACCTCCAACAATAACACCAATGCCAATTGCTCTCCCTCGCTACCCTCCTTCCACAGTGTCTCTCGCCGGAGCTCTGTCGCACCTCTGTCGCCGCAGATTCTCGCCTCCCTTGACCCTGTCTTCCCACAATGGCAGCCCTCTGAACGCGCTTCGCGCATGACTCTGGAGCAGATTGAAGAGGTTCGTTCCCGACTTAATCTTGATGTTACTGTTGCATTTGACTCTCCTCCTGCACCTGCACCAATAGAATCATTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTACCACGAATATACCAGGCCAACTTCGATCCAGGCACAGGCCATGACAATTGCCCTTAGTGGAAGAGATCTATTGGGTTGTGCTGAAACCGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCTCAAGCTTCAATTAGGCGCAATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAACAGAGGTCTGAACTTAGAGCTGGAGTTGAAATAGTAGTTGCCACGCCTGGAAGATTCATTGATCACTTACAACAAGGAAATACTTCTGTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTGGACATGGGTTTTGAACCGCAAATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACACTGCTTTTTAGTGCTACAATGCCCGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGTCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATATCTGAAAACGAGAAGATTGATCGACTTTTAGATTTACTTGTAGAGGATGCATCTCATGCAGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGATAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGTCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAATATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCACATGTCATCAATCTAGATCTTCCTAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTATCTACTTCGTTTTACACTGATCGTGACATGTTCCTTGTGTCAAATATAAGGAAGGCAATAGTTGACGCGGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAACACAAAAAGAGGCAAATATTGCTTTATCCAAACAGGTCGGATTGGGAGCTGCTTCAATTAACATTGAAGATAAATATAAATTCATGATTACTACTACAAACATTAAAAGAGAGGGTGCAGCAGATAGTGCCTGGGATGATTAA 1704 0.4425 MSYVPPHLRNATSTTVSTARTPSVIIDNTHHNNNHHHKLALTSNNNTNANCSPSLPSFHSVSRRSSVAPLSPQILASLDPVFPQWQPSERASRMTLEQIEEVRSRLNLDVTVAFDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMTIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQASIRRNGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIVVATPGRFIDHLQQGNTSVSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASHAEKCGHPFPLTIVFVERKTRCDEVAEALIAQGLSAVSLHGGRSQSERESALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLSTSFYTDRDMFLVSNIRKAIVDAESGNTLTFATGKVARRKEKEAATQKEANIALSKQVGLGAASINIEDKYKFMITTTNIKREGAADSAWDD 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00217 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 330 IPR014001 -
Spst6g00217 567 CDD SF2_C_DEAD 342 480 - -
Spst6g00217 567 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Spst6g00217 567 SMART helicmild6 390 471 IPR001650 -
Spst6g00217 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 512 IPR001650 -
Spst6g00217 567 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 112 498 - -
Spst6g00217 567 SMART ultradead3 143 345 IPR014001 -
Spst6g00217 567 Pfam DEAD/DEAH box helicase 148 317 IPR011545 GO:0003676|GO:0005524
Spst6g00217 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 491 IPR027417 -
Spst6g00217 567 CDD DEADc 135 331 - -
Spst6g00217 567 Gene3D - 84 334 IPR027417 -
Spst6g00217 567 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Spst6g00217 567 Gene3D - 336 529 IPR027417 -
Spst6g00217 567 Pfam Helicase conserved C-terminal domain 354 471 IPR001650 -
Spst6g00217 567 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00217 Spst-Chr6 2204783 2216440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00217 124 493 Eukaryotic Initiation Factors Gene Family AT1G72730 35.580 8.78e-71 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00217 K12823 - gmx:100787545 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00217 6 2204783 2216440 Spst6g00217 6 2204783 2216440 ECH