Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00210 ATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGCGGATTCGCCCAACTGTGCTTCAAGTGCGGGGAGAGGACCAATGCGGCTAATTCGGGAAATATTTCTAGATAATGACTTGGTCTTGTTATTTATGGAAGAGTGGAAGGGTGACATCCTTGAGCCATTATCTGCCTACGAGAGCTCAGTTTTTTGCAGCAAATTCCACCGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGCATGGCATCTAGATCTTTGTTTGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGCACAAATACTAGCCAACTTAGTATGATGAGGAATATTGAAAATCCTAATGGGCCCGTTTCATTGATAAAAAATAATGCAAGTGATCGGAAATCTTCTCATTTTGAGGGAAGACTGTTTGCAGGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGTTGGAATAATGCTCAAAGAGATGGCATAATTGGACGTCATGGGCAAAACAACCAAGAAGCCAAGTGTTCATTCAGGGAAGGAGACATTGGATTTTCAAATGTGATGAAGCCATCGTTAACATTTGCTGCCACATTAGAAAAGAATAGGCCACAATGGGAGATTAAGAAACTCCATGAAACAAATGCACAGCCATCTTTGAGTATGTACCTGGGAAATGCATCAGGTAACAACTCTGTCCCACCTTCTGCTGGAGAGGCTGTTGAAGGAAGACTGGAGGGAAAAACATCTCCTCCCTTTCAACAAGGGCAGAGATCTCGTCCTATATTTCCCAAACAATTGAAGAGTGGGCTTACCATGAATGTGGAAATAGACAAAGGTACAAGTTCTCAATCACGGGTTGCTCGGCCACCTGCAGACGGCAGAGGAAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATCAAGAGTTGGAGCGACTGTCTGGAGATTTGAAATCTACTGTTGTGCCATTATTTGAGAAAGTATTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTTCCAAAAGCCTGCGCTGAGGCATATTTTCCTCATATTTCACAATCTGAAGGTGTTCCTCTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTCTTGGAGGGTGTGACCCCTTGCATTCAGGCCATGCAATTACGAGCTGGTGATACTGTAACATTCAGTCGGATAGATCCCGGAAGCAAACTTGTTATGGGTTTCAGAAGGGCATCGAATTCTCCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACCGAGAATCTGCCATCAGGAAGTAATCATGCTGAACTTCTCCTTTCAATGAAAGGGAATGTGGAACCTCACTTAAATGGACGAACAGAACATCTGCTTTTGGGTACCGGATCTTCTGGGTTGCTTATGACTGAAAATAATGAGACGACAAACAATAGTTCACTACAGCAAAAAATTTCGGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCTAAAAGTAAGAGGTTGCTTATTGACAATGAAGATGCAAGGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTGTTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACATGTTCTTCTGGGGTGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCCATTGGACATGTTTTGAAAATGTTTGGGATTCAAGAAGAAGTTCATGCACTGTACCAGAAGAGCTAAGTTCAGGGGAATTAGAAACTCTTCTGAAAACCAACAAAGATTTTAAGAAGCGACGAAGTGATGAAAACAGCAAGTCAATCCAAGAACATGAGCCTTCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGAAAATCTCGTTGACACTGCCGAATCGTCTGCTGGAGCCACCACCAAACACCCTAGACACCGTCCTGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGAGACACAAGCCAACATGCACATGCAACGTGTGCTTGACTGTGAAGCGCCGGTTCAAAACCCTCATGCTAAGAAAGAAGAAAAAGCAATCCGAACGTGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCTCAAAGACGAGTCGGATACCAATGAAACATCAAGAGATGATTCAACTCAGTTGGAGAAAGAGTTAGGACTAAACAGAAGTCAAGCTGAAGTGGGTGAGTCAAATGCTGCTGGGCAAATTGATCTGAATTCTCATCCCAACCGTGAAGACATGCAAGTGGATATCACAGGAGTTAACATGACTAGTCATCTTGAAACAACAACAAACTCAACTACAGTAAGAGAATGTATGAACCAAAATGGTCCAAGAAGCTATCACAATGAAGTGCAGAATGGTGAGAATTCTTCTTTGCACACACCTCAATCCAATGGAGAAGGCCAGAGATACTTCTCTGATGGTAGAAGCTTTGCATCCATTATGTGGAACCAAGAAACAAGAGATGAGGAAGACAGTCAACCCAACCAAAACCAGAACAATCTTTCTTAA 2772 0.4376 MVRALMNGERGGLCDLADSPNCASSAGRGPMRLIREIFLDNDLVLLFMEEWKGDILEPLSAYESSVFCSKFHRQQTGWRECNFCNKPIHCGCMASRSLFEHLDFGGIGCVSCTNTSQLSMMRNIENPNGPVSLIKNNASDRKSSHFEGRLFAGGVDEGKLMQFCKIIEASESSRWNNAQRDGIIGRHGQNNQEAKCSFREGDIGFSNVMKPSLTFAATLEKNRPQWEIKKLHETNAQPSLSMYLGNASGNNSVPPSAGEAVEGRLEGKTSPPFQQGQRSRPIFPKQLKSGLTMNVEIDKGTSSQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGSKLVMGFRRASNSPDTQDTSTSAQSNSAKGTTSAGTENLPSGSNHAELLLSMKGNVEPHLNGRTEHLLLGTGSSGLLMTENNETTNNSSLQQKISVLEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPAHWTCFENVWDSRRSSCTVPEELSSGELETLLKTNKDFKKRRSDENSKSIQEHEPSGLEALASAAALGENLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCLTVKRRFKTLMLRKKKKQSEREAEAAQKDQVLLKDESDTNETSRDDSTQLEKELGLNRSQAEVGESNAAGQIDLNSHPNREDMQVDITGVNMTSHLETTTNSTTVRECMNQNGPRSYHNEVQNGENSSLHTPQSNGEGQRYFSDGRSFASIMWNQETRDEEDSQPNQNQNNLS 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00210 923 CDD B3_DNA 346 447 IPR003340 GO:0003677
Spst6g00210 923 MobiDBLite consensus disorder prediction 763 830 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 299 320 - -
Spst6g00210 923 SUPERFAMILY DNA-binding pseudobarrel domain 346 448 IPR015300 -
Spst6g00210 923 Gene3D - 612 667 - -
Spst6g00210 923 Pfam B3 DNA binding domain 348 448 IPR003340 GO:0003677
Spst6g00210 923 Coils Coil 759 786 - -
Spst6g00210 923 Gene3D - 326 453 IPR015300 -
Spst6g00210 923 ProSiteProfiles Zinc finger CW-type profile. 609 659 IPR011124 GO:0008270
Spst6g00210 923 MobiDBLite consensus disorder prediction 765 802 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 860 923 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 860 891 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 448 481 - -
Spst6g00210 923 Pfam CW-type Zinc Finger 614 656 IPR011124 GO:0008270
Spst6g00210 923 MobiDBLite consensus disorder prediction 444 481 - -
Spst6g00210 923 ProSiteProfiles B3 DNA-binding domain profile. 348 449 IPR003340 GO:0003677
Spst6g00210 923 FunFam B3 domain-containing transcription repressor VAL1 326 453 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 249 279 - -
Spst6g00210 923 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 60 872 - -
Spst6g00210 923 MobiDBLite consensus disorder prediction 810 830 - -
Spst6g00210 923 SMART B3_2 348 449 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00210 Spst-Chr6 2140259 2146791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00210 60 835 B3 DNA Binding Superfamily AT2G30470 48.909 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst6g00210 B3 3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00210 K09287 - gmx:100789848 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00210 6 2140259 2146791 Spst6g00210 6 2140259 2146791 ECH
Spst6g00210 6 2140259 2146791 Spst8g00240 8 2041314 2054646 PCT