Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00200 ATGGACACTGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTCCCCGATTCCCTCATTCAGAAAACCCTAACTGCGCTTCCCCTCTCCGGCGCCGATTCCCGTCTCAAGAAGACCCTTCTCCTCCGCACCCTCCGTTCCCTCCTCCACAAGGCTTCCCTCCCGGAAACCGCGCTCCAAATCCTCGAACTTCTCGAAGACCTCGATGGTGCCGCTGCCTCCACCGCGCTCCGCCGCGCGTATCTCGCCGTCGCCGTCGAGTGCACTGTCAAGTACCTCGCCGCAGCCCCCGACGACCCCGCCGGGGAGTTCTCCGGTGCCGTGAGGCGGATCTGGCGCGGCCGCGTGGCGGCGCTGGAGGCGAACCGAAGCGGGCTAGTGAGTGGCGAGCTGGCGCGGTGGCGGGACGACGTCGAGGCGGCGCTTGGGGATTCTAGGGTTCGCGAGAAGCTAGCGGATTTGAATAGCAGGAGGGAGGCGATGAAGGAGGTGAGAGCGTTTCTGAAGGAAGCATGGGAATCGATGGGTCCTTCGTTTTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACGAGGGAGAAAGAGGGTTTTGTTGTGGGTGGTAACAGGATTGATAATGATCATGATGATGACAATGACGGTGATAATGATGGCGTTGGTGATGGTGCATGCATGGAGGATGTGGCAATGCATGATGAGAATCAGGGCAAACAACTATTGGAAGAGAAAATTTATGCGAATCAGGAAGTGGGTGGGTGTGACTTGCCGCTTCAGAGAGACAAAGTAATTCAGAAGCGCAATCTTCGGGTTAAACACAAACACTCTGCACTTCGTGCATGTCAAAGGGGAGTTAAAATATCTGGTTCGGAGGAAGTGGAGTCAGAAAAATCATGGGGCAAACATGATTCTGCTCCTACTACTGAAGTTAGAAAAGTTAGGGAATCCCTTAAATCAAGTTCTTCTGAATTACGAGCATTGGTCAATGATCCTCTTCCTGATGCATTGCATATATCTGAAGTTGTAAGATCCAAATTGGCAACAAGTGATACAAATATTGAGCCACTTATTGAAAACCAGAGTGAAGAAGTAGATGTACTAGATCCAGATGTTTGCCAGAGTATTGTACTTTTTCAGACTAATGATGCCAATATTGGGAAGAAGTCTTCTGTTCATTGTAGTAATATTCATCAGCCCAACTTAATGGAACGAAACAGAAGTGTCCGTACCTTTGAGTGGGATGATTCAATAGACAACTCACCACAAGCAAGACAGCCTAGGAGGAGGAAAAGGAAATGGAGTTCGTTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAGGGAAACTGGGCAACAATTAGAAGTTTTTACAGTAATATATTTGACAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGATGA 1452 0.4986 MDTDISRWVMEFLLRSSVPDSLIQKTLTALPLSGADSRLKKTLLLRTLRSLLHKASLPETALQILELLEDLDGAAASTALRRAYLAVAVECTVKYLAAAPDDPAGEFSGAVRRIWRGRVAALEANRSGLVSGELARWRDDVEAALGDSRVREKLADLNSRREAMKEVRAFLKEAWESMGPSFLESVAAMSKGLTREKEGFVVGGNRIDNDHDDDNDGDNDGVGDGACMEDVAMHDENQGKQLLEEKIYANQEVGGCDLPLQRDKVIQKRNLRVKHKHSALRACQRGVKISGSEEVESEKSWGKHDSAPTTEVRKVRESLKSSSSELRALVNDPLPDALHISEVVRSKLATSDTNIEPLIENQSEEVDVLDPDVCQSIVLFQTNDANIGKKSSVHCSNIHQPNLMERNRSVRTFEWDDSIDNSPQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFDNRSGVDLKDKWRNMIR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00200 483 Gene3D - 423 483 - -
Spst6g00200 483 MobiDBLite consensus disorder prediction 415 435 - -
Spst6g00200 483 Pfam Myb-like DNA-binding domain 432 481 IPR001005 -
Spst6g00200 483 SUPERFAMILY Homeodomain-like 428 482 IPR009057 -
Spst6g00200 483 CDD SANT_TRF 433 483 - -
Spst6g00200 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 483 IPR017930 -
Spst6g00200 483 ProSiteProfiles Myb-like domain profile. 427 482 IPR001005 -
Spst6g00200 483 SMART sant 431 483 IPR001005 -
Spst6g00200 483 Coils Coil 154 174 - -
Spst6g00200 483 PANTHER MYB TRANSCRIPTION FACTOR 1 483 - -
Spst6g00200 483 MobiDBLite consensus disorder prediction 204 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00200 Spst-Chr6 2024715 2027621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00200 435 482 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.91e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst6g00200 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00200 - K11111 vun:114187915 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00200 6 2024715 2027621 Spst6g00200 6 2024715 2027621 ECH