Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00199 ATGACCAGGAGAAAGGTGAAAATTGCATTCATAGAAAATGATTCTGCAAGGAAGACAACATACAAGAAAAGGAAGAAGGGAATGCTGAAGAAGGTTGAGGAACTCAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATGGCCCTGGTGATCTTGAACCAGAGGTTTGGCCCTCTCGTTGTGGGGTCCAAAGGGTGGTGGGAAAGTTTAGGAATATGCCTGCAGTGGAGAAGATCAAGAAGATGGTGAACCAAGAGAGTTTCATAAGACAAAGGATCCAAAAGGGTAACGAACAAATGATGAAACTTATGAAGGACAACGCGGAGAAGGAGTTGACCTTGTTCATGTTTCAATGCCTTAATCATGGGAGGGTTTTCCCTGATGAAAATAACATGAACTTGGCTGATTTGAATGTTCTTGCATCAGTGATTGAACAGAATCTGGTAGAAATTGGAAAAAGGTTGGAAACTCTGAATGTTAATCAGCTGGAACCAAATCAACAACCCCAGATGCAAACACCAGCATTCCAACCACAGTTGAAAGCAACATCATACAAAACCCATTTTCAAACACCATCTTACCAACCACACTTGCAAGCACCAACATACCAACCCGAGATGCAAATGGCACTGATGAGTTCTGCGCATGGGTTGGATATGGATGCTAACTCCATGCAAAGGTTGTTGTTTATGAACTTGCTTAATGGTAGCGAAGATGAGACAATGATGCCTCCATTTGGTGATCCTAATCTCCAATTCCAAAGTGATTTTTGGCCTAACCTAGGCTTATCCATCGTCACCGTGTGTTATAGTTTATATAACCCCTTTTACCCTAAGCCAGAGGTTTGGGCATCCGAAAATGGAGTCCATAGGGTGCTGGGAAAGTTCATCAATATGCCTGAATTGGAGCAAAACAAGAAGATGATGAACCAAGAGAGTTTCATAGCACAAAGGATTCAAAAGGGTAACGAGCACATGAAGAAACTTGGGAAGGACAATAGAGAGAAGGAGATGGACATGTTCATGTTTCAGTTCCTTTGA 1044 0.4224 MTRRKVKIAFIENDSARKTTYKKRKKGMLKKVEELSTLCGIDACAIVYGPGDLEPEVWPSRCGVQRVVGKFRNMPAVEKIKKMVNQESFIRQRIQKGNEQMMKLMKDNAEKELTLFMFQCLNHGRVFPDENNMNLADLNVLASVIEQNLVEIGKRLETLNVNQLEPNQQPQMQTPAFQPQLKATSYKTHFQTPSYQPHLQAPTYQPEMQMALMSSAHGLDMDANSMQRLLFMNLLNGSEDETMMPPFGDPNLQFQSDFWPNLGLSIVTVCYSLYNPFYPKPEVWASENGVHRVLGKFINMPELEQNKKMMNQESFIAQRIQKGNEHMKKLGKDNREKEMDMFMFQFL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00199 347 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Spst6g00199 347 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst6g00199 347 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst6g00199 347 PANTHER MADS BOX PROTEIN 3 131 - -
Spst6g00199 347 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Spst6g00199 347 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst6g00199 347 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Spst6g00199 347 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Spst6g00199 347 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst6g00199 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00199 Spst-Chr6 2019377 2022543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00199 267 347 Type I MADS-box Gene Family AT5G48670 46.914 5.70e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00199 SRF-TF 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00199 - - gmx:106797065 358.607