Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00197 ATGTCCCGAAGAAAGGTGGAACTCACATTCATAGCCAATAATTCAGATAGGAAGGCATCATATACCAAAAGGAAGAAGTCACTGCTGAAGAAGACGGAGGAAATAAGCACCCTATGTGGTGTTGAAGCATGCGCTATAATTTATGGTCCTTATGGTCCTGAGCCAGATGTTTGGACATCCAAATCGGGTGTTCAAAATTTGGTGGAAGAGTTCAGGAATACATGTGAGCATAACAGGAAGATGGCGACCCAAGAGAGTTTCCTTTCAGAAAGAATCGCCAAGGGTAGAGAGAAGATAAAGAAACATGTGAGGAGCAACAAAGAGAAGGAGATTACCATGCTCATGTTTCAGTGCCTAAAGAATGGGAGGGTTGAGCCTGAGAATAACATGAGTTCAGATGATTTGAATGCTCTGTCATCAGCGATTGAAAACAAGCTGAGGGACATTAATAAAAGGATGGAGACTTTGAATGTCACTGAGATCACACCAAACCAACCCCAGATGGAACCACCAGCACTACCAGTAGCAGCACCTGAGGAGATCACACCGCCAAATCATGGTGATGGGACAGATATGAATGCTGATGACCCCTTGCAAAGCCAGTGGTTCATGGAATTGCTCAATGATAATGGTGATGACGAGACCACAAAGACTTCATTTGGAGATCCTAATCTCCCACCTCTAATCTGA 690 0.4391 MSRRKVELTFIANNSDRKASYTKRKKSLLKKTEEISTLCGVEACAIIYGPYGPEPDVWTSKSGVQNLVEEFRNTCEHNRKMATQESFLSERIAKGREKIKKHVRSNKEKEITMLMFQCLKNGRVEPENNMSSDDLNALSSAIENKLRDINKRMETLNVTEITPNQPQMEPPALPVAAPEEITPPNHGDGTDMNADDPLQSQWFMELLNDNGDDETTKTSFGDPNLPPLI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00197 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Spst6g00197 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 MobiDBLite consensus disorder prediction 208 229 - -
Spst6g00197 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Spst6g00197 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst6g00197 229 FunFam Agamous-like MADS-box protein AGL80 13 96 - -
Spst6g00197 229 CDD MADS_SRF_like 3 72 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst6g00197 229 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00197 Spst-Chr6 2015026 2015715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00197 1 185 Type I MADS-box Gene Family AT5G48670 46.842 3.86e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00197 SRF-TF 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00197 - - vun:114188526 384.415