Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00195 ATGACTGGGAGAAAGGTGGAACTGGCATTCATAGTCAATAATCATGACAGGAAGGTATCATATAGAAGAAGGAAGAAGTCACTGTTGAAGAAGATGGAAGAACTCAGCACCCTCTGTGGAGTAGAAGCATGTGCTATAGTGTATAGCTCCTTTGATCAAGAGCCACAGATTTGGCCATCCGAATCGGGTGTCCAAAATGTGGTTGAGAAGTTCAGGACTGTACCTGAATGGAAGAAGAACAAGATGGGGAATCAAGAGAGTGTCATTGAAACAAGTATTGTGAAGTGTAAAAAGAAGATTAGGAAACTTGAGAAGGAGAATAAGGAAGTGGAGATGAACATGTTCATGTTTCAATGGCTTAACACAAGTAGGGCTCAGCCTCAACATAACATGACGTTAGCAGATTTGAATCTTCTTTCATCGGTGATTGAACAGAAGTTGAACTGTTTGATAAAGAAGATGAGTGAAATCAGCATCCTTTGTGGGATCCAAGCCTCCGCAATAATTTACACTCCAGATGACCCTAATCAGCAAGAGGTTTGGCCATCTGCCTCAGGAGTCCATAGTATGATTTCCAGGTTCAGATCTGCGTCTGAACTTGAGCAAAGCAAAAAAATGTTCAGTCAACAAAGCTTTTTGAGGCAGAAAATCATCAAAGGCAAGGAGCAGTTGAAGAAACTGAGGAGTGAAAACAGGAAGAAAGAAGTAGACATTCTCATCTCTCAATACCTATCTGCTAGAGACAACCTTGACAAGGCCAGCATCATTGATCTGAATGATATCTCGTTCATGACTGATCAAAAGTTAGCGGAAATAAGAAGGAAGATCACTACGCGCCAAGCTCAACTGATGACACCAGTTACTGAAAATGAAGGAGAACCCTTGAATCAAGGAGAACAAGCTCAAGTGAATCATGTTGACACCAATGTGGATGCCACACAAAATCTGAATTGGTCTATGGACTTCATCAGTGCTGATGGTGGCAATGAAATTTTAACAATGGAAGATGTTAATGTTCTAGGTGGTTGGTTTAATCAATATATCCCTTGA 1050 0.4086 MTGRKVELAFIVNNHDRKVSYRRRKKSLLKKMEELSTLCGVEACAIVYSSFDQEPQIWPSESGVQNVVEKFRTVPEWKKNKMGNQESVIETSIVKCKKKIRKLEKENKEVEMNMFMFQWLNTSRAQPQHNMTLADLNLLSSVIEQKLNCLIKKMSEISILCGIQASAIIYTPDDPNQQEVWPSASGVHSMISRFRSASELEQSKKMFSQQSFLRQKIIKGKEQLKKLRSENRKKEVDILISQYLSARDNLDKASIIDLNDISFMTDQKLAEIRRKITTRQAQLMTPVTENEGEPLNQGEQAQVNHVDTNVDATQNLNWSMDFISADGGNEILTMEDVNVLGGWFNQYIP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00195 349 Coils Coil 93 113 - -
Spst6g00195 349 SUPERFAMILY SRF-like 4 81 IPR036879 GO:0003677|GO:0046983
Spst6g00195 349 SUPERFAMILY SRF-like 145 218 IPR036879 GO:0003677|GO:0046983
Spst6g00195 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Spst6g00195 349 PANTHER MADS BOX PROTEIN 4 127 - -
Spst6g00195 349 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst6g00195 349 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Spst6g00195 349 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst6g00195 349 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst6g00195 349 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst6g00195 349 Gene3D - 14 110 IPR036879 GO:0003677|GO:0046983
Spst6g00195 349 Gene3D - 144 220 IPR036879 GO:0003677|GO:0046983
Spst6g00195 349 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Spst6g00195 349 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00195 Spst-Chr6 2005860 2009984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00195 156 276 Type I MADS-box Gene Family AT5G48670 43.802 9.82e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00195 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00195 - - vra:106752448 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00195 6 2005860 2009984 Spst6g00195 6 2005860 2009984 ECH