Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00194 ATGGAAAAGTCGATTGGATCTCGTTTTCGAAACAGTAGTTTGATGAAAAAGATCAGCGAAATCACTGTCCTTTGTGGGATTGAAGCGTGTGCTGTGGTCTATAGTCCTGATGTGCCTAATAAGCCTGAGGTTTGGCCTTCTGAATCGGGAGCCAAAAGTGTGATTTCCAAGTTCAAGGGTGTGTCTGAAGTTGAGCAAAGCAAGAAAATGTTCTGCCAAGAGAGCTTTATAAGGCAGAGAATTGACAAAGGCCAGGAGCAGCTGAAGAAATTGAAGAATGAAAATAGGAAGAGGGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGGAGCAACAACCTTGACAGTAACAACATGAATTATCTGAAGGGTTTTTCATTCTTCACAGATCAGAACCTGGATGAAATTAGAAACAAAATTTCTGTGTGCCAGGCCCATGAGGAGACACCAGTGATTGACGACGGAGGAAAAACCATGACTCAAGGAGGGCAAGCACGTGTCCAAGGGCCTAGGACCAATGTTGCCAGGAAAAATCTGAATTAG 546 0.4341 MEKSIGSRFRNSSLMKKISEITVLCGIEACAVVYSPDVPNKPEVWPSESGAKSVISKFKGVSEVEQSKKMFCQESFIRQRIDKGQEQLKKLKNENRKREINLLMCEYLTHGSNNLDSNNMNYLKGFSFFTDQNLDEIRNKISVCQAHEETPVIDDGGKTMTQGGQARVQGPRTNVARKNLN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00194 181 MobiDBLite consensus disorder prediction 162 181 - -
Spst6g00194 181 MobiDBLite consensus disorder prediction 160 181 - -
Spst6g00194 181 Coils Coil 74 101 - -
Spst6g00194 181 FunFam Agamous-like MADS-box protein AGL80 3 85 - -
Spst6g00194 181 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Spst6g00194 181 Gene3D - 8 104 IPR036879 GO:0003677|GO:0046983
Spst6g00194 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 37 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00194 Spst-Chr6 1996350 2003771 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00194 10 143 Type I MADS-box Gene Family AT1G65300 42.647 1.03e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00194 SRF-TF 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00194 - - vra:106752448 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00194 6 1996350 2003771 Spst6g00194 6 1996350 2003771 ECH