Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00192 ATGGGAAAGGCACTGCAAAATAACATATTCAGAACTTCCTTCTTGTTCCATTCTTGTTTTTTTCTGCTCACTGTCATGGCTAGAAAGAAGGTCGACCTTACTTTCATAACCAAAGCCTCAAAGAGGAAGGCAACGTTCAAGAAAAGGAAAAATGGTCTGATAAAAAAGATTGGTGAAATCAGCATCCTTTGTGGGATTCAAGCATGTGCTATAATCTACACACCGGATGAGCCTGATCAGCCAGAGGTTTGGCCATCCGAGGAGGGTGTTGAGAGTGCTGTTTCCAGGTTCAGGAGTGTGTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATCGTGAAAGTCCAAGAGCAGCTGAAGAAAGCGAGGAATGAGAACAGGAAGAAAGAGATTGGCCATCTCATTTCTCAATACCTCACTGTTGGAAACAACCTTGAGAGTACCAACCTCATTGATCTGAATGATATCTCATTCTTGGCTGATCAATGCTTGGAGGACATCACAAAGAAAATCACTGTGCGCAAAGCCCAAATGCTGATTCCAGAAAATGGAGGAGAAACCGTGACTCAAGGAGCGCAAGCACAAGTGAATCATGTCCAAGGGCCTTACACCAGTGTGGATGCCATGCAAACTCTGAATTGGTCTACTGACATCATCAATGGTGATGGTGCGAATGAGATGTTAGCATTGGAAGATGTTAATGTCCAAAGTGTTATGGAAGATCTCAGTGATGAGATGAACAGAGACTCAAGGCTGCAACTTTTTCCTCACCGAACTAGAAGAACGCTGGGCTTAGTACTTCCACACCCCTTCCTTCACGCTTCTATCACAAGTACGCCGCTTTCCCTTTCGCAGCGCACACTTACAAATAACCTTCTCAAAAAGTTCTTTGCTGCTAAACCACGCTCTCTCGTACTTCATTCTCACTTTCTTCACAATAATAAGTGGAAGAAGCAACCTTTGATAATGGGAATGAAGGGTGCTTCCGACGACGACCACGTGGTTCTCAAGTCCCCAAACGACCGTCGTTTATACCGCCTCCTCCATCTCCCCAATGGGCTCCGCGCTCTGCTCGTTCACGATCCCGAGATTTATCCAGAGGGGCCTCCCAAGCATGCTCCAAATGAGGATGAGGTTGAGGAGGAAGAAGAAGAAGAAGATGAGGATGATGGAGAAGGAGAAGAAGAATATGATGATGATGATGAGGAGGAGGAAGCTGATGATGAGGGTGATGGTGAAAAGGATGGGGTCAAGGGTGGCGGTGGGGCTACTGCGCAGAGCAAAAGGATGGGATCTGGATTCTGTGTGGAAATGTGGGGATTGGGGAACGGTTATGCTATATGTGATTTGGCTGCAGCAGCTATGTGTGTAGGAATGGGCAGCTTCTCTGATCCGAATCAAGCTCAGGGACTAGCACACTTTTTAGAACACATGCTCTTCATGGGGAGTGATGAATTTCCAGATGAAAATGAGTTGTGTAAGCAATCTGGCATTCTTTCACTGAATGCCACATTGACCCAGGGAGGTCTGTCTTCTAAGTATGATAGCTATTTGTCCAAGCATGGTGGTTCTTCAAATGCATACACAGAAACTGAATACACCTGCTACCATTTTGAAGTGAAGCGAGAGTTTCTGAAGGGTGCCTTGAAAAGATTTTCTCAGTTCTTTATTTCACCTCTTGTAAAGATGGAGGCAATGGAGCGAGAAGTACTTGCAGTAGACTCAGAATTCAACCAGGTTTTACAAAGTGATGCTTGCCGTCTTCAACAACTTCAGTGCCATACTTCTGCTCACAATCATCCTTTAAATAGATTCTTTTGGGGGAATAAAAAGAGCTTGGTTGATGCAATGGTGAAGGGTATTGATTTGCGGGAGCAAATATTGAAATTATATGGTGATTATTACCATGGTGGATTGATGAAGCTTGTTGTTATTGGTGGAGAGTCTCTGGATGTGCTTGAGAGTTGGGTTGTGGAACTGTTTGGTGCTGTCAAAAAAGGTCAAGCAAACCCAGTGTTCTCAGTGGAAGGTCCCATCTGGAAAACTGGTAAAGTTTATTGGCTTGAAGCTGTGAAAGATGTCCATATCCTCGACTTATCATGGACACTGCCCTGTCTACACAAAGAGTATTTAAAGAAGCCAGAGGATTATTTAGCTCATCTCCTTGGGCATGAGGGCAGAGGAAGCTTGCTCTCCTTTCTCAAGACCAAAGGATGGGCTACTTCTCTATCTGCAGGTGTTGGGGATGAAGGGATTTATCGGTCATCTATAGCGTATGTCTTTGTCATGTCCATACACCTCACTGACTCTGGTATAGAAAAGATCTTTGATATCATTGGCTTTGTCTATCAATACCTAAAGTTGTTGCGTCAAGATTCACCACAAGAATGGATATTTAAGGAACTTCAGAATATTGGAAACATGGATTTCAGATTTGTGGAAGAGCAACCTCAAGATGATTATGCTGCTGAGCTTGCAGGTTCCTAA 2511 0.4417 MGKALQNNIFRTSFLFHSCFFLLTVMARKKVDLTFITKASKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPDEPDQPEVWPSEEGVESAVSRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKARNENRKKEIGHLISQYLTVGNNLESTNLIDLNDISFLADQCLEDITKKITVRKAQMLIPENGGETVTQGAQAQVNHVQGPYTSVDAMQTLNWSTDIINGDGANEMLALEDVNVQSVMEDLSDEMNRDSRLQLFPHRTRRTLGLVLPHPFLHASITSTPLSLSQRTLTNNLLKKFFAAKPRSLVLHSHFLHNNKWKKQPLIMGMKGASDDDHVVLKSPNDRRLYRLLHLPNGLRALLVHDPEIYPEGPPKHAPNEDEVEEEEEEEDEDDGEGEEEYDDDDEEEEADDEGDGEKDGVKGGGGATAQSKRMGSGFCVEMWGLGNGYAICDLAAAAMCVGMGSFSDPNQAQGLAHFLEHMLFMGSDEFPDENELCKQSGILSLNATLTQGGLSSKYDSYLSKHGGSSNAYTETEYTCYHFEVKREFLKGALKRFSQFFISPLVKMEAMEREVLAVDSEFNQVLQSDACRLQQLQCHTSAHNHPLNRFFWGNKKSLVDAMVKGIDLREQILKLYGDYYHGGLMKLVVIGGESLDVLESWVVELFGAVKKGQANPVFSVEGPIWKTGKVYWLEAVKDVHILDLSWTLPCLHKEYLKKPEDYLAHLLGHEGRGSLLSFLKTKGWATSLSAGVGDEGIYRSSIAYVFVMSIHLTDSGIEKIFDIIGFVYQYLKLLRQDSPQEWIFKELQNIGNMDFRFVEEQPQDDYAAELAGS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00192 836 Gene3D - 39 139 IPR036879 GO:0003677|GO:0046983
Spst6g00192 836 Gene3D - 324 676 - -
Spst6g00192 836 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Spst6g00192 836 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Spst6g00192 836 ProSiteProfiles MADS-box domain profile. 26 74 IPR002100 GO:0003677|GO:0046983
Spst6g00192 836 SUPERFAMILY LuxS/MPP-like metallohydrolase 690 835 IPR011249 GO:0046872
Spst6g00192 836 Pfam Insulinase (Peptidase family M16) 459 502 IPR011765 -
Spst6g00192 836 Pfam Insulinase (Peptidase family M16) 519 603 IPR011765 -
Spst6g00192 836 ProSitePatterns Insulinase family, zinc-binding region signature. 468 491 IPR001431 GO:0004222|GO:0006508
Spst6g00192 836 CDD MADS_SRF_like 27 109 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst6g00192 836 FunFam nardilysin isoform X1 686 836 - -
Spst6g00192 836 Gene3D - 688 836 - -
Spst6g00192 836 Pfam Peptidase M16 inactive domain 632 812 IPR007863 -
Spst6g00192 836 SUPERFAMILY SRF-like 28 120 IPR036879 GO:0003677|GO:0046983
Spst6g00192 836 PANTHER NARDILYSIN 336 835 - -
Spst6g00192 836 MobiDBLite consensus disorder prediction 385 419 - -
Spst6g00192 836 SUPERFAMILY LuxS/MPP-like metallohydrolase 340 677 IPR011249 GO:0046872
Spst6g00192 836 MobiDBLite consensus disorder prediction 370 436 - -
Spst6g00192 836 SMART madsneu2 26 86 IPR002100 GO:0003677|GO:0046983
Spst6g00192 836 FunFam Agamous-like MADS-box protein AGL80 38 124 - -
Spst6g00192 836 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 76 IPR002100 GO:0003677|GO:0046983
Spst6g00192 836 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00192 Spst-Chr6 1981039 1990453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00192 26 209 Type I MADS-box Gene Family AT5G48670 42.935 5.12e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00192 Peptidase_M16_C 1.7e-12 CL0094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00192 K01411 - gmx:100797049 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00192 6 1981039 1990453 Spst6g00192 6 1981039 1990453 ECH