Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00190 ATGGCCAGAAAGAAGTTGGATCTGACATACATTACCAATGACTCGAAGAGGAAGACAACCTTAAAGAAAAGAAAAATTGGTTTGATCAAGAAAATGAATGAAATTAGTACCCTTTGTGGGATTGAAGCATGCGCCATAATCTACACTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGAGTTAGAAGTCCAGAGAGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAAAGCAGAAAGATGTTGAATCAGGAGAGTTTGTTGAAGCAAATAATCAGCAAAAGCCAACATCAGTTGACAAGACAAAGGAATGAAAATAGGAAGAAAGAAATGACCCATCTTATGTTTCAGTACTTAAGTGTTGGGAGGGTTTTTGACAATCCTAGCTTGGTAGATTTGAATGATCTCTCATGGCTGATTGATCAAAAGCTGAATGAAATAAAAAAGAAGATGACTATGATCCAAATCCAAGAAGTGGCACCAGTGACTGAAAATGAAGGAGAACAGGGATACATGCATCATGTCCAAGGACCAGAGAGCAAGATAAACATAATTTAG 564 0.3848 MARKKLDLTYITNDSKRKTTLKKRKIGLIKKMNEISTLCGIEACAIIYTPNDPQPEVWPSELEVQRVLSKFMEMSEQKQSRKMLNQESLLKQIISKSQHQLTRQRNENRKKEMTHLMFQYLSVGRVFDNPSLVDLNDLSWLIDQKLNEIKKKMTMIQIQEVAPVTENEGEQGYMHHVQGPESKINII 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00190 187 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 PANTHER MADS BOX PROTEIN 3 154 - -
Spst6g00190 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Spst6g00190 187 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Spst6g00190 187 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Spst6g00190 187 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Spst6g00190 187 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00190 Spst-Chr6 1970852 1971664 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00190 1 157 Type I MADS-box Gene Family AT5G48670 50.955 1.29e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00190 SRF-TF 9.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00190 - - gmx:100797590 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00190 6 1970852 1971664 Spst6g00190 6 1970852 1971664 ECH