Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00188 ATGGCACACAAGGAACTTTCCATTGCTCTTGTGATTCTCATTGTTGTTCTCTTTGTTAACAGGAATCTCCAAGGTGCCACTGCTGACTATGGTGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGCTATGGAAATTTGTATAGCCAGGGTTATGGAACTGACACTGTGGCTCTAAGCACTGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTATGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATTACTGTTACTGCTACTAACTTCTGCCCCCCAAATCCATCTTTGCCTAACAACAATGGTGGTTGGTGCAACCCTCCCTTGCAACACTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCTGAATATAGAGCTGGAATTGTGCCTGTGGCCTTCAGAAGGGTTCCTTGTGTGAAAAAGGGAGGAATAAGGTTCACCATCAATGGTCACTCTTACTTCAACCTAGTTTTGATAACCAATGTTGGTGGTGCTGGGGATGTGCATTCAGTGTCCATCAAAGGGTCCAAAACTGGGTGGCAACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTAACGGACAATCCCTTTCTTTTCAAGTCACCACCAGTGATGGCAGAACTGTGGCAAGCTACGATGTAGCACCAGCCAATTGGCAATTTGGCCAGACCTTCCAAGGAGGCCAATTCTAG 768 0.4701 MAHKELSIALVILIVVLFVNRNLQGATADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSITVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVASYDVAPANWQFGQTFQGGQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00188 255 FunFam Expansin 23 159 - -
Spst6g00188 255 Gene3D - 18 158 IPR036908 -
Spst6g00188 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Spst6g00188 255 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Spst6g00188 255 Pfam Lytic transglycolase 68 152 IPR009009 -
Spst6g00188 255 SMART dpbb_1 68 153 IPR007112 -
Spst6g00188 255 FunFam Expansin 163 255 - -
Spst6g00188 255 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Spst6g00188 255 SUPERFAMILY Barwin-like endoglucanases 13 181 IPR036908 -
Spst6g00188 255 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Spst6g00188 255 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Spst6g00188 255 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Spst6g00188 255 PANTHER EXPANSIN-A15 11 255 IPR002963 GO:0009664
Spst6g00188 255 CDD DPBB_EXPA_N 32 158 - -
Spst6g00188 255 Gene3D - 163 255 IPR036749 -
Spst6g00188 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00188 Spst-Chr6 1951221 1953377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00188 6 255 Expansin Gene Family AT2G40610 80.876 1.77e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00188 - K20628 gmx:100499976 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00188 6 1951221 1953377 Spst6g00188 6 1951221 1953377 ECH
Spst6g00188 6 1951221 1953377 Spst7g00787 7 8211261 8212410 ECH
Spst6g00188 6 1951221 1953377 Spst8g00237 8 2023452 2025909 ECH
Spst6g00188 6 1951221 1953377 Spst8g00237 8 2023452 2025909 PCT