Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00174 ATGAAGGCAGAAACCCTACTTGTAGTCGAGGGTTTTCACTCTTCTCAAATTGGTATTTACAAGTGGCCATTTTGCTGTGTCCATTGGAAATTTGGAACCACAGACCACTCCTCCTCCTTCATTTGTACTGTCTCTGGATTGTCTCTGCGACCTGCACTGTCACTGAATAGCCTTTGTTCTGCAACTTTTGCCAAGACAAAAATCGTTGGGGAGAAGGAGAGGGGTGGGGCTGTAGGATTGTATGAGTGTGTTATGGAGATATCATATTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCATTTTCTGGAAACATGAACTGTGAACCTGTCTCAAAGTATTACCGGAAGGCAGAGGAGATACTTAAGTTGTTGAAGCCAATCATTGATGCGATTGTTAATTCAGAGTTAGCTTCTGATGAAGTGCTTAATAAGATGTTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGCGCATGTTGAGAACTGGCACCTATTGTCTAGCAAATTATACTTTGTTATGCAAGTTGAACCTCTGATTTCAAGAATTTGCAATTCAGGGCTCAATATTTTCCAGCAGCTGAAGGCTTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAAGATTTACAGCACTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTACAGAGTTACTGGAATATGTAGGGCCCAGTCCAGAGGTTCTGACAAAAATTGCTGATAGCCTGGGCCTACTGTCTAATCAGGAGGTTCTTATTGAAGCTGTGGCCCTCGAAAGGTTGAAGGAAAATGCTGAACAAACTGAAAAGACTGCAGAGGCTGAATACATTGATCAAATGATTGCTGTTGTAACACGAATGTATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTAGCAGCCCAGTTTCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAAAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAAACTCTGGCTCATACCAACCTTATACCTAATTATACTGTAAAAGCACTAATTGCCAATTGGTGCGAGTCCAACAATGTTCAACTAGTTGATCCCTCAAAATCCACAAATTTAAATCAACCATCCAGCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAATCGCCTGTTTTTGCTCACCCCAGGAACAACCAGTCATCCTCACCTGAGTCAGCGCGTTCTCGTTCTTTTAGTTCACCAGGTAATAACACAACTTCTGGTGGCATTCAGCTAGAGGAAACATCATCATCACCCTTGCATCCCCGTTCAATTTCAGAAGGCTCCTTAAGTGGTATGGGTAATGGACAATGTATAGATCTTGGTAGAATATCTCTTGCCGGTTTGGATGACAGATCTTCTAGCTCAGATGAAAGCACCATGGATTCAGCTAGCCAACCATCAATGTCACCAACTAGAAGGGACTCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAGCCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTAATGCAAATTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCAGCTGTCAACGAGTCCAGGCCACAGTAGAGATGCCTCTGGTGAATTAAATCCAGGGCCAGAAACTGCTGGTACTACTACCACGCCATCAACACATAGAGAAGCTGAGTTCCCACCCCGATTGTTGGAGACAAGGCCTCGGAGTCAAGCCATATGGAGGCGATCATCAGATAGGCTCGTTCCTAGGATAACATCTCCTGCTATTGAAACAAGAGCTGATCTTTCTGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAACATGGATAATCGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAAATCAGCTGATACAACTATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTATCAATCAACGATAACAACAAAACTGCAATTGCGAATGCTGGTGCAATTGAACCTCTAATTCATGTGCTTGAGACTGGGAGCCCAGAAGCGAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCAGGGGCAATTAGACCATTGGTAGATTTACTGGGGAATGGAACCCCAAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCAATATATCATGAAAACAAGAATAGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGATCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCTGCCGCAGCTCTTCTACATCTTTGTTCACATAGTACCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCTAGGGGCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATTCTGGGAGGGGCTGA 2772 0.4315 MKAETLLVVEGFHSSQIGIYKWPFCCVHWKFGTTDHSSSFICTVSGLSLRPALSLNSLCSATFAKTKIVGEKERGGAVGLYECVMEISYLKMIVNGISSFLHLSFSGNMNCEPVSKYYRKAEEILKLLKPIIDAIVNSELASDEVLNKMLEEIGLAVNELKAHVENWHLLSSKLYFVMQVEPLISRICNSGLNIFQQLKASQHCLPDELSSEDLQHCSQKLKLLGHEETSSVIKEAITELLEYVGPSPEVLTKIADSLGLLSNQEVLIEAVALERLKENAEQTEKTAEAEYIDQMIAVVTRMYERLVMLKQAQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPSKSTNLNQPSSLHGYMESGTTRESPVFAHPRNNQSSSPESARSRSFSSPGNNTTSGGIQLEETSSSPLHPRSISEGSLSGMGNGQCIDLGRISLAGLDDRSSSSDESTMDSASQPSMSPTRRDSSSAFSSEQSQAHIRAVSDSSALSNANFPQETQDDDNNAQLSTSPGHSRDASGELNPGPETAGTTTTPSTHREAEFPPRLLETRPRSQAIWRRSSDRLVPRITSPAIETRADLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLKSADTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCSHSTKFLGKVLQQGAVPPLVALSQSGTPRGKEKAQALLNQFRSQRHGNSGRG 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00174 923 SUPERFAMILY RING/U-box 310 396 - -
Spst6g00174 923 FunFam RING-type E3 ubiquitin transferase 623 918 - -
Spst6g00174 923 PANTHER U BOX DOMAIN-CONTAINING 113 911 - -
Spst6g00174 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 762 804 IPR000225 GO:0005515
Spst6g00174 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 803 844 IPR000225 GO:0005515
Spst6g00174 923 MobiDBLite consensus disorder prediction 494 608 - -
Spst6g00174 923 Coils Coil 263 293 - -
Spst6g00174 923 Pfam U-box domain 320 390 IPR003613 GO:0004842|GO:0016567
Spst6g00174 923 SUPERFAMILY ARM repeat 640 912 IPR016024 -
Spst6g00174 923 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 399 IPR013083 -
Spst6g00174 923 MobiDBLite consensus disorder prediction 422 478 - -
Spst6g00174 923 FunFam RING-type E3 ubiquitin transferase 319 394 - -
Spst6g00174 923 MobiDBLite consensus disorder prediction 578 592 - -
Spst6g00174 923 ProSiteProfiles U-box domain profile. 319 393 IPR003613 GO:0004842|GO:0016567
Spst6g00174 923 MobiDBLite consensus disorder prediction 395 415 - -
Spst6g00174 923 Gene3D - 620 917 IPR011989 -
Spst6g00174 923 MobiDBLite consensus disorder prediction 494 570 - -
Spst6g00174 923 CDD RING-Ubox_PUB 321 373 IPR045210 -
Spst6g00174 923 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
Spst6g00174 923 Pfam Armadillo/beta-catenin-like repeat 753 790 IPR000225 GO:0005515
Spst6g00174 923 Pfam Armadillo/beta-catenin-like repeat 710 749 IPR000225 GO:0005515
Spst6g00174 923 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 751 791 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 710 750 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 792 831 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 623 667 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 832 872 IPR000225 GO:0005515
Spst6g00174 923 SMART arm_5 669 709 IPR000225 GO:0005515
Spst6g00174 923 MobiDBLite consensus disorder prediction 395 481 - -
Spst6g00174 923 SMART Ubox_2 323 386 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00174 Spst-Chr6 1851356 1857149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00174 280 923 U-box Gene Family AT2G23140 62.883 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00174 - - gmx:100811250 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00174 6 1851356 1857149 Spst8g00219 8 1861595 1864440 PCT