LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g00173	ATGTTGGTTAGAAAGTGTCCAAGGACTAATGGCATTGGAGACAACAATGTAGCAGTTCTAGACTTCACAACTCCGAATCATTTTGACAACAACTACTTCAAGAACCTCCTCAACAAAAAGGGACTCCTCAGTTCTGATCTCGTGCTTTTTAATGGTGGATCTACTGATTCACAGGTTAGAACTTACAGCAAGAATAACAAGGCCTTCGATTCTGACTTGAGTTGA	225	0.4044	MLVRKCPRTNGIGDNNVAVLDFTTPNHFDNNYFKNLLNKKGLLSSDLVLFNGGSTDSQVRTYSKNNKAFDSDLS	74

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g00173	74	Pfam	Peroxidase	13	65	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	PRINTS	Plant peroxidase signature	19	34	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	PRINTS	Plant peroxidase signature	35	52	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	SUPERFAMILY	Heme-dependent peroxidases	3	72	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	ProSiteProfiles	Plant heme peroxidase family profile.	1	74	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	PANTHER	PEROXIDASE 72-RELATED	4	72	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Spst6g00173	74	Gene3D	Peroxidase, domain 2	1	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g00173	Spst-Chr6	1849948	1850347	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g00173	4	74	Peroxidase	AT5G05340	63.380	1.79e-25	94.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g00173	K00430		-	gmx:100813250	108.612