Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00155 ATGACTCATTCTTTCTCTGACCTTCTTTCTTCTCCCACCGACCACAACCTCGCAGGCTCCGAAAGACCTCAGGTGTCGGATCAAACAGGGTCTGGTGCGCCAAAATTCAAGTCCACACCACCTCCCTCTCTCCCTCTCTCTCACCCTCAAAATCATCCTCTTCCACCCATTTCTCCTTCTTACTTTAACATCCCCCATGGGTTAAGCCTTGCTGAACTTCTTGACTCTCCAGTTCTCCTCAACTCTTCTAACGGTTTGCCATCTCCAACGACTGGATCATTTGCTGGTGAAGGCTTCAATTGGAAGAGCATTTATGGGGAAAGCCAGCTCCATGTCAAAGAAGAAAATAAAAGCTTCTCAAGTTTCTCCTTCCAAACACAAACACAAACACAGCCTCCTCTTACATCTTCAACTGGATTTCAATCTTCAATCGGCATACTTCAAACCGGGTGGAGTTTTCCGGAAACCGCTAAACAAGATGGTTTTTCTTCAAGAACGAGTATGAGTATGGTGAAAACTGAAACCTCTTCTGCGATGCAGAGTTTCAACTCTGAGAATAACCACAAGAGTGCTGGTTTTCAATCAGATTATAACAAGTACCAGCCACAAGTTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAATTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACACATTACTGAGATTGTTTATAAAGGCAGTCATAACCATCCCAAGCCTCAGGCTACCAAGAGGAACTCATTGTCTGCCTCATCTCATACAATTCCTCATTCAAATAGTGTTAACAATGAAATGACACTCACCACTCATCAAATGGATTCGGTTGCAACTCCAGAAAACTCATCTATATCAATGGAAGATGATGATTTTTGTCAGAGTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGTTGGAAGTAGAACAGTTAGGGAACCCAGAGTCGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGAAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACATGACCTAAGAGCAGTTATCACAACCTATGAGGGAAAGCACAACCACGACGTGCCTGCAGCACGTGGCAGTGGCAGCAACTCTATCAGCAGATCAGTACCTATAAACACTACCACAAACAGCACCACTAGTGCAGCCTCCTCTATATACATTAACAATTCTCATCAGAATCCTAGACCACCAGGACCAGAAAGGACACAACACTTCAACCCCAATATGCAGCAGGGCTCAGGAAGTTTTGGATTCTCAGGCTTTGGAAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCACCTCTAGAGCGAAGGAGGAGCAAGGAGATGACTCGTTTCTTGACTCTCTGCTATGTTAA 1608 0.4384 MTHSFSDLLSSPTDHNLAGSERPQVSDQTGSGAPKFKSTPPPSLPLSHPQNHPLPPISPSYFNIPHGLSLAELLDSPVLLNSSNGLPSPTTGSFAGEGFNWKSIYGESQLHVKEENKSFSSFSFQTQTQTQPPLTSSTGFQSSIGILQTGWSFPETAKQDGFSSRTSMSMVKTETSSAMQSFNSENNHKSAGFQSDYNKYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGHITEIVYKGSHNHPKPQATKRNSLSASSHTIPHSNSVNNEMTLTTHQMDSVATPENSSISMEDDDFCQSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSISRSVPINTTTNSTTSAASSIYINNSHQNPRPPGPERTQHFNPNMQQGSGSFGFSGFGNPLMGSYMNQQSDNVFTSRAKEEQGDDSFLDSLLC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00155 535 MobiDBLite consensus disorder prediction 308 335 - -
Spst6g00155 535 FunFam WRKY transcription factor 200 271 - -
Spst6g00155 535 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 Pfam WRKY DNA -binding domain 374 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 ProSiteProfiles WRKY domain profile. 368 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 MobiDBLite consensus disorder prediction 429 495 - -
Spst6g00155 535 MobiDBLite consensus disorder prediction 261 292 - -
Spst6g00155 535 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 SMART WRKY_cls 373 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 MobiDBLite consensus disorder prediction 435 495 - -
Spst6g00155 535 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 74 461 IPR044810 GO:0003700
Spst6g00155 535 MobiDBLite consensus disorder prediction 270 292 - -
Spst6g00155 535 MobiDBLite consensus disorder prediction 321 335 - -
Spst6g00155 535 MobiDBLite consensus disorder prediction 1 58 - -
Spst6g00155 535 FunFam WRKY transcription factor 33 360 426 - -
Spst6g00155 535 Gene3D WRKY domain 197 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 MobiDBLite consensus disorder prediction 1 36 - -
Spst6g00155 535 SUPERFAMILY WRKY DNA-binding domain 365 433 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 Gene3D WRKY domain 360 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00155 535 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00155 Spst-Chr6 1710921 1713796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00155 209 534 WRKY Transcription Factor Family AT2G38470 55.241 2.10e-105 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g00155 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00155 K13424 - gmx:100127421 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00155 6 1710921 1713796 Spst6g00155 6 1710921 1713796 ECH
Spst6g00155 6 1710921 1713796 Spst8g00196 8 1654041 1656897 PCT