Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00138 ATGGGCGGTACCTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGCCGTTGCTCCAAGGAATGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTCGCCATTGTGCATAAGGTCTTTGGTGCTAGCAATGTCAGTAAAATGCTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTGGTTTACGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGATGTGTTGGAGCCATATCATACCTTCAAAACCAGGTTTCGCAACTGCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATTCTATGCGTCCAGATGCAGCAACAAGAACCAACCCTAACCACACAAGTAGACCAAGATCACAAATCACTCCTCCTATCTGTTAACAATAATAACTATGAAATCCTTCCTCAGTATCTTAACTTTCCTTCGTCCTCTTCCACATCTTCAAATGTGTTCCAAGACCCCCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 519 0.4528 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCVQMQQQEPTLTTQVDQDHKSLLLSVNNNNYEILPQYLNFPSSSSTSSNVFQDPHEPLKRESFWT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00138 172 Coils Coil 85 105 - -
Spst6g00138 172 MobiDBLite consensus disorder prediction 152 172 - -
Spst6g00138 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 140 - -
Spst6g00138 172 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Spst6g00138 172 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00138 Spst-Chr6 1577585 1578854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00138 3 172 AS2 family AT2G30130 67.368 3.88e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst6g00138 LOB 7.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00138 - - gmx:100780073 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00138 6 1577585 1578854 Spst6g00138 6 1577585 1578854 ECH