Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00122 ATGCGTGGTCTCAAGCTCGCTGAACGTTTCAAGAGCATTCAAGTACATGCTCTCAGTTCTTCTTCGTCAGAAACAAACGGCGGCAATAGCAAGAAAGGCTCGGAAACAATAGGTGGTAATAGCAGCAAAACCAAATCTCACAACAACCTTAACAGGAACCGAAACATAATACCACCATGGTCAAAAACCAAATCCAGCACAAACAACAACCCAACCTCAGAATTTGCAAACCTTGTCCCTCTTCACCTCCCTTCCACCGACACCATTGAACCAACCATAGAACCTCACTTTAAGCCCATAAACCTTGTGGAGACCTTATCAGAGTTCTATCAGCGCATGGAGTGTTGCTCACAGTCCAACAAAGCAGTAATGTGTGTGGAACAGTGTACTCTCTTGCGCGGCCTTGGTGATCAGAAAATTCTTAGAAGATGTCTCAGGACAGCATGTCAAAATGCTGGGGATGTGCTCTCCAAGGTTGTGTTGTCTGCATGGTTGATGTTTGAGAGGAGAGATGATGAGCTTGTTGGTCTTTGTTCAATGGATTGTGGTGGTTATGTTCTAGAGTGTCCAAAGAAGAATTTAGAACCTGGGTTTCGTCCTTGTTCAGTTAATGATCACTGCCAGTGTCAACAAGAGTTAAATCAGGAAACCTGCACTGAGAGTGTGCGTAAGTCAGATGAGGAAAGTGATGTTCTGTTTTGTGTTGGGAGGGAAGAAATCAGTTGTGTCAGGTATAGGATAGCTGCTCTTTCAGACCCTTTTAATGCTATGCTCTATGGTGGCTTTACTGAGTCCAAAATGAGCAAGATTGATTTTTCAGGAAATGGGATATGTCCGAAGGGAATGAGGGCAGTGGAGTTTTACAGCAGGACCAAAAGATTGGACCTCTTCTGCCCAATGACTGTTTTGGAGCTTCTGTCCTTTGCCAATAGGTTTTGTTGTGAGGAGATGAGTTCTGCCTGCGATACTCATCTGGCTTCAATTGTTGTGAATGTTGAAGATGCGTTGGTTCTTATTGAGTATGGATTGGAAGAGAGAGCCACCTTTCTTGTAGTGGCTTGCTTACAAGTGTTTCTCAGGGAGCTTCCAAATTCTTTGTATAATCCAAAGGTGGCAAAAATATTCTGTAGCTCTGAGGTAAAGGAAAGGTTAGCCAATATGGGGTGTGCCTCTTTCTTATTGTACTACTTCCTGAGCCAGGTGGCTATGGAGGAAAACATGGTGTCTAAAACAACAATGATGTTGCTGGAGAGAATGGGGGAGTGTGCCACAGAAAGATGGCAGACAGCCCTAGCATTCCACCAATTGGGGTGTGTGTTGCTTGAAAGGAAAGAATACAAAGATGCTCAGCATTGTTTTGAGGTAGCAGTTGAGGAGGGTCATGTTTATTCATTGGCTGGTGTGGCCAGAACTAAGTACAAACAGGGTCAACCATATTCAGCCTATAAGTTAATTAGTTCTCTCATATTTGAGTATAAACCAGCTGGGTGGATGTATCAGGAGCGTGCACTATACAACATGGGAAAGGAGAAGAGTTTTGATTTAGATGTTGCAACTGAATTGGATCCGTCCCTTTCATTTCCATATAAATATAGAGCCCTAGCAAAGGTGGAGGAGAAGCAGATAAAGGAAGGGATTATAGAGCTAGATAAGTTTATTCGATTTAAACTCACCCCTGATTGCCTAGAATTGAGAGCTTGGTTAAATGTGGCACTTGAGAATTATGAAAGTGCAATGAGAGATATTCGGGCATTGCTAACCATTGAACCAAATTACATAACTTCACATGGGAAGATCAAAGGGGGATACTTGCTCCAACTTCTAAACCGTGGAGTTCAGCAGAAGAGTCAGGCCGATTGCTGGATGCAGTTATATCAGCAATGGTCTTGTGTAGATGATGTCGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTTCTAGAGTTTCGTCAGTCTCTACTCTTACTGAGATTAAACTGTCAGAAGGCTGCAATGCGCAGCTTGCGGTTGGCCAGAAACCACTCTAGCTCAATGCAAGAGAGCCTAATTTATGAAGGATGGATCCTGTATGACACTGGCTATCGTGAAGAAGCTTTGGCAAGAGCTGACAGATCCATTGCAATTCACAGATCATTTGAAGCTTTTTTTCTAAAAGCATATGTGTTGGCAGATACAACTCTGGATCCTGAATCTTCTTCCTACGTCATTCAGCTTCTAAAAGAAGCACTTAAATGTCCTTCAGACGGTCTTCGCAAAGGACAAGCATTGAATAACTTGGGGAGTATTTATGTGGATTGTGGTAAGCTTGAGCTTGCAAAAGAATGCTACAAGAATGCACTGGCAATTAGGCACACAAGAGCTCATCAAGGTCTAGCACGAGTTTATCATCAGAAAAATCAAAGAAAAGCTGCATATGATGAGATGACCAGGCTAATTGAGAAGGCAGAGAGCAATGCCTCAGCATATGAGAAAAGATCAGAATACTGTGACCGTGAGATGGCAAAAGTTGATCTTGATGTTGCAACTCAACTTGATCCTTTAAGATCCTATCCATATAGATACAGAGCAGCAGTGTTGATGGATGAGCAAAAAGAAACTGAAGCATTAGAAGAACTTACCAAGGCCATAAAATTCAAGCCTGATATGCAAATGCTTCACCTACGAGCTGCATTTTATGAGTCAATGGGGGACCTATCATCTTCTCTACAAGATTGTCAGGCTGCTCTTTGCTTAGACCCAAATCATGCAGGCACACTTGATCTATATCGAAGGATGCGGAAGTTGAACTTCTAA 2811 0.4273 MRGLKLAERFKSIQVHALSSSSSETNGGNSKKGSETIGGNSSKTKSHNNLNRNRNIIPPWSKTKSSTNNNPTSEFANLVPLHLPSTDTIEPTIEPHFKPINLVETLSEFYQRMECCSQSNKAVMCVEQCTLLRGLGDQKILRRCLRTACQNAGDVLSKVVLSAWLMFERRDDELVGLCSMDCGGYVLECPKKNLEPGFRPCSVNDHCQCQQELNQETCTESVRKSDEESDVLFCVGREEISCVRYRIAALSDPFNAMLYGGFTESKMSKIDFSGNGICPKGMRAVEFYSRTKRLDLFCPMTVLELLSFANRFCCEEMSSACDTHLASIVVNVEDALVLIEYGLEERATFLVVACLQVFLRELPNSLYNPKVAKIFCSSEVKERLANMGCASFLLYYFLSQVAMEENMVSKTTMMLLERMGECATERWQTALAFHQLGCVLLERKEYKDAQHCFEVAVEEGHVYSLAGVARTKYKQGQPYSAYKLISSLIFEYKPAGWMYQERALYNMGKEKSFDLDVATELDPSLSFPYKYRALAKVEEKQIKEGIIELDKFIRFKLTPDCLELRAWLNVALENYESAMRDIRALLTIEPNYITSHGKIKGGYLLQLLNRGVQQKSQADCWMQLYQQWSCVDDVGSLAIIHQMLENEPGKSLLEFRQSLLLLRLNCQKAAMRSLRLARNHSSSMQESLIYEGWILYDTGYREEALARADRSIAIHRSFEAFFLKAYVLADTTLDPESSSYVIQLLKEALKCPSDGLRKGQALNNLGSIYVDCGKLELAKECYKNALAIRHTRAHQGLARVYHQKNQRKAAYDEMTRLIEKAESNASAYEKRSEYCDREMAKVDLDVATQLDPLRSYPYRYRAAVLMDEQKETEALEELTKAIKFKPDMQMLHLRAAFYESMGDLSSSLQDCQAALCLDPNHAGTLDLYRRMRKLNF 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00122 936 Pfam Tetratricopeptide repeat 760 788 IPR019734 GO:0005515
Spst6g00122 936 Coils Coil 804 831 - -
Spst6g00122 936 Gene3D Tetratricopeptide repeat domain 835 935 IPR011990 GO:0005515
Spst6g00122 936 MobiDBLite consensus disorder prediction 16 73 - -
Spst6g00122 936 SUPERFAMILY TPR-like 430 888 IPR011990 GO:0005515
Spst6g00122 936 ProSiteProfiles TPR repeat profile. 759 792 IPR019734 GO:0005515
Spst6g00122 936 SUPERFAMILY POZ domain 220 326 IPR011333 -
Spst6g00122 936 Pfam BTB/POZ domain 221 325 IPR000210 GO:0005515
Spst6g00122 936 Gene3D Tetratricopeptide repeat domain 416 598 IPR011990 GO:0005515
Spst6g00122 936 Gene3D Potassium Channel Kv1.1; Chain A 218 366 IPR011333 -
Spst6g00122 936 Gene3D Tetratricopeptide repeat domain 653 824 IPR011990 GO:0005515
Spst6g00122 936 PANTHER ETO1-RELATED 1 933 IPR044631 GO:0010105
Spst6g00122 936 SUPERFAMILY TPR-like 430 714 IPR011990 GO:0005515
Spst6g00122 936 SMART BTB_4 229 329 IPR000210 GO:0005515
Spst6g00122 936 SMART tpr_5 559 592 IPR019734 GO:0005515
Spst6g00122 936 SMART tpr_5 759 792 IPR019734 GO:0005515
Spst6g00122 936 SMART tpr_5 855 888 IPR019734 GO:0005515
Spst6g00122 936 SMART tpr_5 889 921 IPR019734 GO:0005515
Spst6g00122 936 SMART tpr_5 430 463 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00122 Spst-Chr6 1393524 1396936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00122 760 920 Glycosyltransferase AT3G04240 26.901 3.76e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst6g00122 BTB 0.00015 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00122 - - gmx:100790527 1667.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00122 6 1393524 1396936 Spst6g00122 6 1393524 1396936 ECH
Spst6g00122 6 1393524 1396936 Spst8g00130 8 1074223 1078421 PCT