Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00112 ATGCCAACCCAACCCGACTCACCCAACACGTTGACCCAAATGTTTCAGAACATTTTTTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAAATGGTTCCTTGCTCAGGCCCAGGCTCAGGCACACGCCCGCCGTCGCCGACGCCGACGCCGAACGACGGTGACTGTCTCCGACGTCCTTGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCAACATCGAAGACTCCTCACCCCTCTCAACCAAAGGCCTTGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTATGAGCATAACAACAAGGCCAACGAAAATGAAGAAGAAGAAGAAGAAGAAGAACTTGAATGCGTGATTTGTTTGAGTGCCTTTGAGGGAGGTGAGGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATCGTAGTAAGTGTTGTTGAGAGTGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGATGAATACGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCTGATGAGACTAGAGCGAGTGAGCATGGGAATGGGAATGGCAACGGAGGAGCAAGAGCAAGTGTTTCTGTGTCAGAAACTTCTTCATCGTTTTTTGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCATCGACTAATTAA 786 0.4822 MPTQPDSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSSPLSTKGLDSSTIRAIPLFIYEHNNKANENEEEEEEEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVSVVESDSSQVVSSRDHGDEYGGSDFEIVVDAGSDETRASEHGNGNGNGGARASVSVSETSSSFFGCSLERMLGKVFPSTN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00112 261 SMART ring_2 134 175 IPR001841 -
Spst6g00112 261 Coils Coil 113 133 - -
Spst6g00112 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 181 IPR013083 -
Spst6g00112 261 CDD RING-H2_EL5-like 134 176 - -
Spst6g00112 261 Pfam Ring finger domain 133 176 IPR001841 -
Spst6g00112 261 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Spst6g00112 261 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 181 IPR044675 -
Spst6g00112 261 FunFam RING-H2 finger protein ATL1 87 181 - -
Spst6g00112 261 SUPERFAMILY RING/U-box 122 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00112 Spst-Chr6 1283202 1283987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00112 17 227 Rapid Response to Elicitors AT3G16720 33.175 3.94e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00112 - - pvu:PHAVU_006G070000g 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00112 6 1283202 1283987 Spst6g00112 6 1283202 1283987 ECH
Spst6g00112 6 1283202 1283987 Spst8g00125 8 1037202 1037912 PCT