Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00108 ATGGTTTCTACTTGGGTAAGGGGCAAGTGCATCGGTAAAGGCGCGTTTGCCACAGTCAGCGTCGCGCTTCGCAAACTTGACGCTCAAACGCAAATTTTCGCGGTTAAGTCCGTGGATATCAAAACGGGTCTCCCGGGTCAGCTCGAGGCGTTGGAGAACGAGATTCGGATCCTCCAGCTCATGTCCTCGCCGCACGTCGTAACCTTTCTCGGCGAAGACACCACGTGCGACAAGCGGAACCTTCACATGGAGTACATGCCAGGGGACACTATCGCTGACCTGGACGCCGACTTAGACGAGCATTTAGTGAGACAGTACACGTGGTGCTTGGTGAGCGCTCTGAAGCACGTGCACGCAAACGGCGTCGTTCACTGCGACGTGAAGGGGAAGAACGTCCTCGTCGGAGAAGGAGCCAACGGTTGCATCTGCAAGCTCGCCGACTTCGGCTCGGCAATGGAGTTCTCCGGCGAGGGGATACCGGCGGCTTCCCCGCGCGGGAGCCCACTGTGGATGGCGCCGGAGGTGATACGCCGGGAGTTTCAGGGTCCGGCGTCGGACGTTTGGTCGTTAGGATGCACGGTTATCGAGATGCTCACCGGAAAACCGCCGTGGGAGGGGAACTCCGTCGACGCGCTGAGTCGGATTGGATTCTCCTGCGAGGTGCCGGAGTTTCCTCAACGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGAGTGAGCCGTGGCGGCGGTGGAGCTGCGATGAGCTGCTGCAGCATCCGTTTCTGTTACCGTATGGTGAGATCGTGGAATCATCGCCTCGGTGCGTTCTGGACCGAGTTGACTCGGAGTTCACTGAGTTCGAGGAGGAGGTGGAGGAGGAAGAAGAAGAAATAAAAACTGAAAGTGAAAATTGGGCGAGGGGTAGAATTGGAAAATTGGCTATGAGAGTAGTGATGAACTGGGAGACGCAAGGTTGGGTGGTGGTGAGGGAATTGGGTTTCGATGCGGAACCGGCGGTGGCGGTTGACAGTTGTGAGGACGTTAAAGAAGGGACGAGTTTGGAAAATTTGGAGCTTTGGAGGGTAGAATGGGGAATTGGGATGGGGACAAATTGGGAATGTTCAGGTTCGGAAGACGAAGGAATAAAATTGGCAACGTGGAATTTGGGTTGGAGGCGTGGGTTGGTGCAGTGCAAGCCGTGCAGCAAGTGTGAGTGTGGGTGGAAAAATGTGGATAAGAAAAAAGGAATAATATTGAAAATGAAGGTTTACAAGTTGTACCGTAAATTATTGAAATCACATTGTTTGATTTTGAAGTACTTAAATATATATTTATGTTTTGGAGTTATTTGTGTTGATTACTTACTTTTGATGGCATTGTGA 1374 0.5262 MVSTWVRGKCIGKGAFATVSVALRKLDAQTQIFAVKSVDIKTGLPGQLEALENEIRILQLMSSPHVVTFLGEDTTCDKRNLHMEYMPGDTIADLDADLDEHLVRQYTWCLVSALKHVHANGVVHCDVKGKNVLVGEGANGCICKLADFGSAMEFSGEGIPAASPRGSPLWMAPEVIRREFQGPASDVWSLGCTVIEMLTGKPPWEGNSVDALSRIGFSCEVPEFPQRLSELGRDFLEKCLRSEPWRRWSCDELLQHPFLLPYGEIVESSPRCVLDRVDSEFTEFEEEVEEEEEEIKTESENWARGRIGKLAMRVVMNWETQGWVVVRELGFDAEPAVAVDSCEDVKEGTSLENLELWRVEWGIGMGTNWECSGSEDEGIKLATWNLGWRRGLVQCKPCSKCECGWKNVDKKKGIILKMKVYKLYRKLLKSHCLILKYLNIYLCFGVICVDYLLLMAL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00108 457 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 299 - -
Spst6g00108 457 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00108 457 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Spst6g00108 457 SUPERFAMILY Protein kinase-like (PK-like) 3 270 IPR011009 -
Spst6g00108 457 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00108 457 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00108 457 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Spst6g00108 457 CDD STKc_MAPKKK 5 259 - -
Spst6g00108 457 FunFam Serine threonine protein kinase putative 3 311 - -
Spst6g00108 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Spst6g00108 457 Coils Coil 274 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00108 Spst-Chr6 1233908 1235281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00108 5 334 MAP Kinase Kinase Kinase AT2G30040 57.692 3.86e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Spst6g00108 Pkinase 2.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00108 - - gsj:114373085 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00108 6 1233908 1235281 Spst6g00108 6 1233908 1235281 ECH
Spst6g00108 6 1233908 1235281 Spst8g00122 8 988075 989469 PCT