Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00107 ATGCTTTCTCTTCCCATTCCCTCTACGACGCCCTCTTGCTCCTCTCCACCCTCCTCTCCCCTGCTGAAGCGAAGGAGACCTGCAAAACTCGACATTCCCGCTGCTTCTTTTGCTTTTACGATATCGCCGGCCCCGGCGCCGTCTCCGGCGATGGACGCGGTGGTCGAGGTAGAAGGACGCGGGTTTTATGTGTTCTGCAAACGGGGAAGGAGGCTCCACATGGAGGATCGTTACTCCGCTGCCGTTGATATTCACGGGGAACCCAAACAGGCTTTCTTCGGCATATTTGATGGGCATGGGGGCACAAAGGCTTCGGAATTCGCTGCACATAACTTGGAAAAGAACGTGTTGGATGAGGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAGCATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATTTTCATGGTGGCTCTTGCTGTGTGACAGCATTGATAAGGAATGGTAACCTCGTTGTGTCCAACGTGGGGGATTGTCGTGCTGTGATTAGCAGAGGGGGTGTGGCAGAAGCCCTCACATCTGATCACAAGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTGTGGAGGATCCAAGGATCATTAGCTGTTTCTAGGGGAATTGGTGATAGGAACTTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCGATGCATGACTTATTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTCGTCCTTTTTGTGTAGGGAACGATAGACAACAACCTTTGCTGGCTTGTAAGAAGCTCGTGGATTTATCTGTGTCACGAGGCTCTTTGGATGATATAAGTGTCATGATTATCAAGTTACAAAACTATGTTTGA 951 0.4858 MLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPAASFAFTISPAPAPSPAMDAVVEVEGRGFYVFCKRGRRLHMEDRYSAAVDIHGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIEEAVKHGYLNTDSEFLKEDFHGGSCCVTALIRNGNLVVSNVGDCRAVISRGGVAEALTSDHKPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPMHDLLILASDGLWEKVSNQEAVDIARPFCVGNDRQQPLLACKKLVDLSVSRGSLDDISVMIIKLQNYV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00107 316 FunFam probable protein phosphatase 2C 25 54 315 - -
Spst6g00107 316 SMART PP2C_SIG_2 77 312 IPR001932 -
Spst6g00107 316 PANTHER PROTEIN PHOSPHATASE 2C 65 311 IPR015655 GO:0004722|GO:0006470
Spst6g00107 316 SUPERFAMILY PP2C-like 61 314 IPR036457 -
Spst6g00107 316 ProSiteProfiles PPM-type phosphatase domain profile. 61 312 IPR001932 -
Spst6g00107 316 MobiDBLite consensus disorder prediction 1 23 - -
Spst6g00107 316 Pfam Protein phosphatase 2C 66 304 IPR001932 -
Spst6g00107 316 CDD PP2Cc 60 312 IPR001932 -
Spst6g00107 316 Gene3D - 54 316 IPR036457 -
Spst6g00107 316 SMART PP2C_4 49 310 IPR001932 -
Spst6g00107 316 MobiDBLite consensus disorder prediction 1 19 - -
Spst6g00107 316 ProSitePatterns PPM-type phosphatase domain signature. 92 100 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00107 Spst-Chr6 1225696 1227816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00107 4 316 PP2C-type Phosphatase Gene Family AT2G30020 64.062 8.30e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00107 K17506 - gmx:100779913 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00107 6 1225696 1227816 Spst6g00107 6 1225696 1227816 ECH
Spst6g00107 6 1225696 1227816 Spst8g00121 8 967566 969480 ECH
Spst6g00107 6 1225696 1227816 Spst8g00121 8 967566 969480 PCT