Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00097 ATGTCCATACACTATTCCGCGCCACCGCCGCCCACCCTCCAATCCATCCGCTGCTCCCTCTCCCATATCTCCTCCCCGCCTCCCGACCACCGCCCCTTCGACACCCCCCACCGCTTCGCTGCCTTCGCCCACCGCCTCTCCCACCTCCTCCTCCTCCTCCTCCCGCATCAGCACTCTCCACCCGTCCACACATCCCTCAAGGGACTCGCCGCCGAGCTCTCCAAGGCCGCCGAAACCCTCTCCGTCTACAACAACGGCAGCAAGATTCTCGTCCTCCTCGACTGCAAATCCCTCTGCTCCGCCCTCCACGAACGCGTCGTCGCCATTGCCGCTTGGCTCGCACTCCTCGCTTCCGCCCTCCCAACCGCCGCCTCTGGCGTCGACGACGACGACGACCTCCGCAAGAAGGTCTCTGACCTCGCTAGGGACATGAAGCTCGCACAGTTTATTGTATCAGACAGCGAAAAGAAGGTTTGGTGCACACTACAAAAGGAAGGAGATGGAAGAGAGAGCAGCAAAGCTGTGCAGAGTGGAATTGTCATGGATTTGGCTCGCGCTTTGGGTTTTGACCCTAGTGATCGTGATGAGTTTTGTAACCAGGTGAGGCTCTTCAAAGATGATCCTTTTAGATCTCACTCTGTGCCTGAGAGAAGAGTATTGGTATCCTTGGAGAGGATTCTTAGCAATTGGTCCGTGGAACCTGTCTCTGTGACCTCCCATTGGGACTTTGAAGATGCTGATGCTCCTGTTTTTCCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCCTCTCAGGCCTATGAGAGGACTGCCATTGAGTACTGGTTTGAACGGTGCATACAAGATGGCCGTGACCCCACTTGTCCAGTTACTGGAACGGTTCTTAAGTCATTGGAGCTGAAGCCTAACATTGGGCTAGCTGGGGCAATTGATGAGTGGGTTGGCAGGGTTGTTGATTATCAAATCAAATCTGCAGTGCAGTATCTGAGTGAAGAACCCTTGTCTGTTGATCATGTTGAGCATGCTCTGGATCATGTTTATAAGGTTTCAGAAGAACACCCCGCTAGAATATACATAATCAGAAATGCTGGTGTTGTGATTTTGATAGTAAATGTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGTAAAGCTCTAACGACTTTACTTAGCATGGCGAAGGATGACGAAAGCAGGAAAATAATGCTTGAACGGGGTATAACTAGATTGGCTGTACATAGTCTTATTGGGAGCTCTGAGAAAGAGAGAGAATATGCTACCAAGTTATTACTAGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGTATAGCAGGAAATCTAGAGTATCCATCTTTGTCAAATTTAGCTGAGGAAGTCTTGAGGCAGATGGAGAGGGTAGATGATAATGTTCAATGTTTGGCAGCAGCGGGAAGATTTGGACCATTGATTTCACGGTTACACAATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTAACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGAGCCAGAGCATTTGTAGAACTTCTGCCTTATCAAGAGGGAACTAGACCAAGTCTGCAAGCATTGTATAACTTGTCAGGATTGGATGGCAATGCAACCATCCTTATTGAGTCTTCAGTCCTTCCATCTCTAACGGAAGTTTTATTTGATAGGCAGGATCCATCTCATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCTTCCGCTGACAAGAAAGGAAACCCAATGCAGTCAGAAATTATTGTTTTAAGACTTCTGGGGCTTTTAAACTGTTTGCCCTCTCAGTGTCAAGTGGTAGTTCTTCGCATTCTTTGTGGTATTATATCATCTCCTCAAGCATCAGAGTTAGTAGCAAGTCATATCACGTCCAAGGGTGGCTTTAGAACGGTCATACCATTTCTGGAACACCCAGAAGTTGAACACAGGGTGTTTGCTTTTAAGCTTACAAGACTACTATCCGAATGGTTTAGTCAATACATTGCAAATGAGTTGAGACTTCAAAACAAACTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAAAGGTCAGATGCAGCACAGATACTAGCCAATGTCTCCCTCTCAGAAAGTGAAATGCAGACACTTCTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAACCAGCTGCGTGCTTCCAATGCAAGGTCTTCTCATAGTGCTGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGAAACCCTGATCAAGAAACTCTTACTATAATTAGGGGTAATCACCTTATGGACATTTTCTGTGAGCAGCTGGATTATACTTCAAAACCAAAGGTAAAACAACTTGCTGCTATTGGATTGAAAAACTTGTCAGAATTTGGATATTCAGATACTACCAGGGACTCTAAACTACCATCTTCCGGTGGATTCTGTTCCTCCCTTGTGTTTGTCTGTGGGAGATCCCCAAGTCAATCTTCCACATGCCCCATTCACAACCGTCCCTGCAATGAAGATAGTCAGTTTTGCCTGCTCAAGAGCAACTGTATTAAACTCCTGGTTGATGTCCTCAATGACAGTGACACTGATGTTCAGCTAGCTGCAGTGGATGCACTTTCAACACTAGTACTAGATCACAAATCTAGCAGTTTCAAAAGAGTTGTTGACGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTATGACTCTTTTTACAGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATAGAAAAGATATTGAGAGTGGAAAATATTAGCAGTCGATATGCACTCAATCATTCTCTTGTGAGAACTTTGGTCGAAGCCTTTAAGCATGGCAATACCAACACAAGGAAACATGCTCAAGATGCTCTTACCCTCCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTCGGAGATAG 3126 0.4555 MSIHYSAPPPPTLQSIRCSLSHISSPPPDHRPFDTPHRFAAFAHRLSHLLLLLLPHQHSPPVHTSLKGLAAELSKAAETLSVYNNGSKILVLLDCKSLCSALHERVVAIAAWLALLASALPTAASGVDDDDDLRKKVSDLARDMKLAQFIVSDSEKKVWCTLQKEGDGRESSKAVQSGIVMDLARALGFDPSDRDEFCNQVRLFKDDPFRSHSVPERRVLVSLERILSNWSVEPVSVTSHWDFEDADAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERTAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIDEWVGRVVDYQIKSAVQYLSEEPLSVDHVEHALDHVYKVSEEHPARIYIIRNAGVVILIVNVLSNNSKTIGSRLRSKALTTLLSMAKDDESRKIMLERGITRLAVHSLIGSSEKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNLEYPSLSNLAEEVLRQMERVDDNVQCLAAAGRFGPLISRLHNGSVGVKIEMASLVGRMTLTNSCKEQIARQGARAFVELLPYQEGTRPSLQALYNLSGLDGNATILIESSVLPSLTEVLFDRQDPSHELKSLAASTIANIVSKPGHWELASADKKGNPMQSEIIVLRLLGLLNCLPSQCQVVVLRILCGIISSPQASELVASHITSKGGFRTVIPFLEHPEVEHRVFAFKLTRLLSEWFSQYIANELRLQNKLTILKEKLLNNQSTSDERSDAAQILANVSLSESEMQTLLGGNFVEWTAVTLKNQLRASNARSSHSAAGMQEGLIGLLLHFTRNPDQETLTIIRGNHLMDIFCEQLDYTSKPKVKQLAAIGLKNLSEFGYSDTTRDSKLPSSGGFCSSLVFVCGRSPSQSSTCPIHNRPCNEDSQFCLLKSNCIKLLVDVLNDSDTDVQLAAVDALSTLVLDHKSSSFKRVVDELEHLGAVDALMTLFTEVRSEELREKTIWMIEKILRVENISSRYALNHSLVRTLVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRARR 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00097 1041 CDD RING-Ubox_PUB 256 311 IPR045210 -
Spst6g00097 1041 SUPERFAMILY ARM repeat 335 619 IPR016024 -
Spst6g00097 1041 Pfam U-box domain 256 325 IPR003613 GO:0004842|GO:0016567
Spst6g00097 1041 SUPERFAMILY RING/U-box 253 325 - -
Spst6g00097 1041 SMART Ubox_2 255 324 IPR003613 GO:0004842|GO:0016567
Spst6g00097 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 39 1031 - -
Spst6g00097 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 327 IPR013083 -
Spst6g00097 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Spst6g00097 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Spst6g00097 1041 SMART arm_5 895 935 IPR000225 GO:0005515
Spst6g00097 1041 SMART arm_5 810 851 IPR000225 GO:0005515
Spst6g00097 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Spst6g00097 1041 SMART arm_5 364 408 IPR000225 GO:0005515
Spst6g00097 1041 Gene3D - 328 853 IPR011989 -
Spst6g00097 1041 SUPERFAMILY ARM repeat 419 1026 IPR016024 -
Spst6g00097 1041 ProSiteProfiles U-box domain profile. 251 331 IPR003613 GO:0004842|GO:0016567
Spst6g00097 1041 Gene3D - 893 1037 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00097 Spst-Chr6 1138649 1145018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00097 253 1030 U-box Gene Family AT1G20780 28.536 2.22e-81 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00097 - - gmx:102659945 1709.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00097 6 1138649 1145018 Spst6g00097 6 1138649 1145018 ECH