Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00085 ATGGCACGCCACACCATGGAGGAGGACTTGAATATCTTGGAGATGAACACTGAGCCTTGTAATGACAGCAATGCTACAACTGCAAAGACAGCACCGCCACAGGCACAGAACAACCTCACATCTTCAGCTGTCACAAACAAGTGTCCATTTTTGGTCACCAAAGTTCGCTTCCAGATGCTTAGGAGTTTCACAGCCAATTTGCAGGAGGTCGTTTTTGGCACTAAGCTTGCTGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGCTGCAGATTTTTATAGCCTTGGAAGGCCTTGGATTTTTGCTTTGAGCCTGCTTGGACTCACCCCGCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTCGTGAAGTTCTCCCTGCTGGGTTCCATTCTCTCAAACCTTCTATTAGTTCTTGGAAGTTCACTCCTCTGTGGAGGCTTAGCCAACCTTAGGAAGGAGCAAAGATATGACAGAAAACAAGCAGATGTAAACTCACTGGTTCTGTTGCTAGGTTTGCTATGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGGGAATATCCTTCTATTGCCACTAGCGCTCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTCGCATATGCCGGATACATCTTCTTTCAATTAAAAACACATCGACAAATTTTTGATGCACAACAGGAAGTAGAAAATGAAGATGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTGCTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCATGGGGTATCTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAACACGCTGGCTCAATCATATTTGCTTTTAAGAACAAGTTGGACATATCATTGGGAGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTATGTGTGGTTGTTGCATGGCTAATGGGTATGGAAATGGATTTGGATTTCAATCTTCTTGAAACTGGGTGTCTTGCTTTCACAATTATTGTTACAGCATTTACTTTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTGCTTTTCCTGTGTTACATTATCATTGCTGCATGCTTTTTTGTTCACAAAACTCCACTCATAAGCACCACGTTCATTAGTATAAAATGGTTTCAATATGGGAGGGAGGGTCAGCCATCTAGAGTCCCCCATCGGGTAATGGCAACCATAGACGAGACAAACCATGTTGCTGTCATCTTTGGGGTCACTGGACTTGTTGGGAGAGAGTTGGCTAGGAGGTTTCTGCTCCAAGAACCTTCTTGGAAGGTTTATGGTATAGCTAGAAAGCCTGAAACACCACCAACCCTTATAAGCCCTTGTTACCATTTCATCTCTTGCAATTTACTGAACCCTTTGGAGACACAGCAGAAGCTATCTGGCTTACAAGATGTGACTCATATGTTTTGGGTCACATGGGCTAGCCAGTTCCAATCAGAGACTCAACAAAGTTGTGAGCAGAACAAGGTCATGATGTCCAATGCTTTGAACTCTATGCTCTCAATAGCCAAGAGTCTAAAGCATGTTTCCCTTCAGACAGGAACCAAGCACTATGTGTCACTGCATCCCCCCTTTGAGCAAGAGAAGCTCCACTGTTACTACTACCATGAAGAGTTCCCCAGAATGAGCAGATCCCTTAATTTCTATTATGCCCTGGAGGATTTGCTCATGGAGAAACTGAGTGGTAAGGTGTCTTGGTCTGTTCATAGGCCTGGTTTATTGTTGGGTAGCTCTGTTAGATCAATTTATAACTTCATGGGAAGCTTGTGTGTTTATGGGGCTATTTGTAAACATTTAAGGCTCCCTTTTGTGTTTGGGGGGACAAGAAAGTGTTGGGAGGAGGCCTATATTGATGGATCAGATGCTAGGCTTGTAGCTGATCAGCACATTTGGGCAGCCACAAATAGTAAGATAATTTCCATCAATGGCCAAGCCTTCAACTCAATCAATGGCCCAACTTTCACATGGAAGGAGGTTTGGCCAATTGTTGGGAAGAAATTGGGAGTGCAAGTTCCACAAGACATGTTTGTGGAAAACTTTTGGTTTTCTAAAGCCATGACTGGGAAGCAGAAAGTTTGGGAAGAGATTGTGGAGGAATATGGGTTGGTTCATACAACTGTGGAAAATTTGGCTAACTGGGAATTTTTAGATGCCTTGTTTCGTTTACCTTTCAAACTCTTGGGGAGCAGAGACAAAGTTGATGGACTTGGTTTTGGTGCAAGGTATAAGACATTGAATTCAATATTGTATTGGATTGATTGCATGAGAGATGAGAAGCTGATTCCCAAGGCTTCTTGGTAG 2514 0.43 MARHTMEEDLNILEMNTEPCNDSNATTAKTAPPQAQNNLTSSAVTNKCPFLVTKVRFQMLRSFTANLQEVVFGTKLAVLFPAVPLAVAADFYSLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSILSNLLLVLGSSLLCGGLANLRKEQRYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGEYPSIATSALQLSRASSIVMLLAYAGYIFFQLKTHRQIFDAQQEVENEDEEKAVIGFWSAFAWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLCVVVAWLMGMEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYIIIAACFFVHKTPLISTTFISIKWFQYGREGQPSRVPHRVMATIDETNHVAVIFGVTGLVGRELARRFLLQEPSWKVYGIARKPETPPTLISPCYHFISCNLLNPLETQQKLSGLQDVTHMFWVTWASQFQSETQQSCEQNKVMMSNALNSMLSIAKSLKHVSLQTGTKHYVSLHPPFEQEKLHCYYYHEEFPRMSRSLNFYYALEDLLMEKLSGKVSWSVHRPGLLLGSSVRSIYNFMGSLCVYGAICKHLRLPFVFGGTRKCWEEAYIDGSDARLVADQHIWAATNSKIISINGQAFNSINGPTFTWKEVWPIVGKKLGVQVPQDMFVENFWFSKAMTGKQKVWEEIVEEYGLVHTTVENLANWEFLDALFRLPFKLLGSRDKVDGLGFGARYKTLNSILYWIDCMRDEKLIPKASW 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00085 837 Gene3D - 467 833 - -
Spst6g00085 837 NCBIfam calcium/proton exchanger 81 426 IPR004798 GO:0006816|GO:0015369
Spst6g00085 837 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016020|GO:0055085
Spst6g00085 837 Pfam Sodium/calcium exchanger protein 283 424 IPR004837 GO:0016020|GO:0055085
Spst6g00085 837 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 431 IPR004713 GO:0006812|GO:0008324|GO:0016020
Spst6g00085 837 FunFam Vacuolar cation/proton exchanger 273 427 - -
Spst6g00085 837 Gene3D - 127 427 IPR044880 -
Spst6g00085 837 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 459 751 IPR036291 -
Spst6g00085 837 CDD 5beta-POR_like_SDR_a 468 792 - -
Spst6g00085 837 FunFam Vacuolar cation/proton exchanger 127 272 - -
Spst6g00085 837 MobiDBLite consensus disorder prediction 17 40 - -
Spst6g00085 837 NCBIfam calcium/proton exchanger 62 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00085 Spst-Chr6 1009240 1016386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00085 16 447 Antiporters AT2G38170 64.009 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00085 K07300 - gmx:100778821 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00085 6 1009240 1016386 Spst6g00085 6 1009240 1016386 ECH
Spst6g00085 6 1009240 1016386 Spst8g00104 8 826094 828849 PCT