Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00070 ATGAAGTGGGAAATGGAAATCCTCCCTCCGGCCTCACCTTATATGTACAACTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAACACCAAATGGACCCCTGCGGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAGGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACTACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGGTACGATGGCTTCAAAGGCCTCACTGCCAAGAGATCCTCCTCTGGTAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACATAAATTGTTTCTACTAGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATTACTCGAACGCCAACTCAAGTTGCTAGTCATGCACAGAAGTACTTCATCAGGCAACTTTCTGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACAGTGAATCTCACAGAAACCACCAGAACTTCTTCAGAAGACAGCAAGAGATCCGCATCACCACAGCATTCGGTGATGCTCTCACACCAGCAGCCAAATTCTAGTGCTACCTCATCAGGAGTGAATTTCCAGTGGAGTAATCAGCCAAATGCAGGAGTACCTATGGCTCTCAATCCTGCACATGAACAAGTGTTCATGTCCCCTTATGGCTTTAACTCATATGGGTACAAGGTGCAAGGCCAAAGTCTGCACAGAAGTCCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAACACTATTCCCATGCATAA 951 0.4721 MKWEMEILPPASPYMYNSNWLLDDNRTNTNTKWTPAENKLFENALAVYDKDTPDRWHRVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSEDSKRSASPQHSVMLSHQQPNSSATSSGVNFQWSNQPNAGVPMALNPAHEQVFMSPYGFNSYGYKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00070 316 Gene3D - 137 187 - -
Spst6g00070 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Spst6g00070 316 Gene3D - 25 92 - -
Spst6g00070 316 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Spst6g00070 316 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Spst6g00070 316 CDD SANT 138 183 IPR001005 -
Spst6g00070 316 SUPERFAMILY Homeodomain-like 132 186 IPR009057 -
Spst6g00070 316 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 27 255 IPR043363 -
Spst6g00070 316 CDD SANT 32 78 IPR001005 -
Spst6g00070 316 FunFam Transcription factor SRM1 25 92 - -
Spst6g00070 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Spst6g00070 316 MobiDBLite consensus disorder prediction 207 245 - -
Spst6g00070 316 FunFam transcription factor MYB1R1 137 188 - -
Spst6g00070 316 MobiDBLite consensus disorder prediction 119 138 - -
Spst6g00070 316 SUPERFAMILY Homeodomain-like 31 86 IPR009057 -
Spst6g00070 316 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Spst6g00070 316 SMART sant 29 81 IPR001005 -
Spst6g00070 316 SMART sant 135 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00070 Spst-Chr6 910486 911839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g00070 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00070 - - gmx:100784163 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00070 6 910486 911839 Spst6g00070 6 910486 911839 ECH