Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00061 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTCTATCTCCTCATCCTCTTGGTCCACCTTGGCTGCTTCATCTTTACCACCACCGCCGCCGGAGGAAAACAAACGCCTCCGTCAAAGAAACGCAAATTCTCACCTTCGTCCCAACCCTCTTCCCATCCACACCCCAAATTCAAAACCCATAAAGCCCTTTCCTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAGTCCTGCAAAAACCCCACAACCGCCACCGCCCAATCCTTCCCTCAATCCACCGCCACCACAACCGCAACCACCGTCTCCACCGCCGCCGCCGCAGCAGCAACAGCACATTCCCTAGTTTCACTAACACAACCCGACCCGGACAGAAAACCTCCCGGGTCGTGCCCAGAATCCGACATCTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACTGCGTGCGGTGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTCAAACATGCGGTTTCGGATCTACCCGGATCCGACCCGGGCCACAACATCGTCCAGATAATCTTCAAATCAGGTTGGCCCGAATCTAAACCCACCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCCAAGATTCTCGCGAAATTTGAGGAGTACCGCGAGGCCGTCAAGTCCAAGGCAGCGCGTCACGGCACCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGCTTCCATTGCTCGACGTTTCTCTGCGACTTAGGACACAGCGGGGATTCCTCGATTTGTTCGCAGCAATTTTGTAATATCTGTGGAATTATCAAGTCCGGATTTTCTCCAAAACTCGATGGGATCGCCACGCTGTCCACCAGCTGGCGGGCACACGCCACGATCCCAGATGACGTGGAAAGGGAGTTTCACTTCATGAACGTCAAACGGGCCATGCTTGTTTGTCGGGTGATTGCGGGTCGGGTTGGATCCGATTCGGATGAGGCCGAAAAAGAGGATGGCAGTTTTGATTCTGTGATGGCGAGAGCAGAGAGTGGGGTTTACACCCGCCTTGATGAGGAGGAGTTGCTGGTGTTTAATCCAAGGGCTGTACTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1176 0.5468 MASSIATFFNKFLYLLILLVHLGCFIFTTTAAGGKQTPPSKKRKFSPSSQPSSHPHPKFKTHKALSSSWHFIKHLFSTKSCKNPTTATAQSFPQSTATTTATTVSTAAAAAATAHSLVSLTQPDPDRKPPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLPGSDPGHNIVQIIFKSGWPESKPTPTITRILKIHNSPKILAKFEEYREAVKSKAARHGTLTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHATIPDDVEREFHFMNVKRAMLVCRVIAGRVGSDSDEAEKEDGSFDSVMARAESGVYTRLDEEELLVFNPRAVLPCFVIVYSV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00061 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 68 389 - -
Spst6g00061 391 Gene3D - 177 390 - -
Spst6g00061 391 MobiDBLite consensus disorder prediction 117 136 - -
Spst6g00061 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 177 IPR013087 -
Spst6g00061 391 ProSitePatterns Zinc finger C2H2 type domain signature. 155 176 IPR013087 -
Spst6g00061 391 MobiDBLite consensus disorder prediction 33 60 - -
Spst6g00061 391 MobiDBLite consensus disorder prediction 33 55 - -
Spst6g00061 391 SUPERFAMILY ADP-ribosylation 180 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00061 Spst-Chr6 828954 830129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00061 69 391 C2H2 Transcription Factor Family AT2G29660 53.916 7.22e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst6g00061 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00061 - - var:108341815 655.21