Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00059 ATGGGAGGAGGTGGTGCCTTTATTCCGCTTACTGGATGTGGAAATTCAAAGGTCCCTAACCCTTCTAAGATTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTCGGCACAACAAAGCTATTCCACTCAGCAACATCCATGCAGTGTTGCAAACAATATCCATGCAACTGCTTTGGATGGTTTTGATGGCTCAACCTACAACTTTATGTGGCATAATGGTTCTCAGGACGTGAATTTTGTTGGACAGTTTTCAGAAAATGAAGTGGCTCTGAATTGGACACAACAAGTCTCCCCACTGTGCTTGAAAGAAGATTTGCATTTGTCAGGGAAGAAGCCCGAAGGGGTGGGACGCAGACCTAGGGAAGGATCTTATATGCCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGATACTGTTAAAGTTGGTGAAGCAACATGGTGTAGGGAAATGGTCTCAGATAGCTGAAAAGTTGGATGGAAGGGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAAAATATCATGCTAAGCTTGGTAACCGCTGGGCAGAAATTGCAAAGAAAATGAAAGGAAGAACAGAAAATGCAATAAAAAACCATTGGAATGCCACCAAGAGGAGACAAAACTCCAGGAGAAAGAACAAAAGAGCAGGAATCTCAAATGGCAAGCCACTGTCCTCTATACTGCAAGACTACATCAAAAGTTTGACTCTCACCAACACTTCAACTCCCTCTGTGGAACAAACATTATTACCACCCCGACACTTCTCTGATTCTGTTACCAATGACAATTTCTCAGTAATGGCTGAGTCCTATGATGATGAAATGTTCTTCATGCAACATGTCAATGAGAATGATGCCAGTGTTGAATCTGTTAAGCAAACCAAGAATATCAACAACTCTTTTGCAGCCTTTGATTATTATCATCATCAAACTAGTAACAACAGTAGTCATCTTCTCAGTGATGTCACTCGATCAGACCATGTTGTTCATTCCAACCTAACGACAAACTCATACAACATGTTGGATGAGAGTCTTTTCCTATCTGAAAAGACTCCTGCAGTCAACTACCTTGATTTTGATGTCTGTCTCTCTCACTTGCATAATGGAACTGCCGGTTCATCATTTGTCTATAATAATGGGATTCACAACCAGAACATGGAGTTGCATTTGGAGAAGCAAGATTGGTTACTAGGAAAGAGAGATATGGATACTGTAGAGTTAGTTTCCTCTACTACTCAGTTTTTGGACCAGTAA 1329 0.4146 MGGGGAFIPLTGCGNSKVPNPSKISVGPPLTAIERFLSAQQSYSTQQHPCSVANNIHATALDGFDGSTYNFMWHNGSQDVNFVGQFSENEVALNWTQQVSPLCLKEDLHLSGKKPEGVGRRPREGSYMPWIKGQWTEEEDRILLKLVKQHGVGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVKYHAKLGNRWAEIAKKMKGRTENAIKNHWNATKRRQNSRRKNKRAGISNGKPLSSILQDYIKSLTLTNTSTPSVEQTLLPPRHFSDSVTNDNFSVMAESYDDEMFFMQHVNENDASVESVKQTKNINNSFAAFDYYHHQTSNNSSHLLSDVTRSDHVVHSNLTTNSYNMLDESLFLSEKTPAVNYLDFDVCLSHLHNGTAGSSFVYNNGIHNQNMELHLEKQDWLLGKRDMDTVELVSSTTQFLDQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00059 442 ProSiteProfiles Myb-like domain profile. 132 178 IPR001005 -
Spst6g00059 442 PANTHER MYB PROTEIN-RELATED 118 303 - -
Spst6g00059 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 182 IPR017930 -
Spst6g00059 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 233 IPR017930 -
Spst6g00059 442 Pfam Myb-like DNA-binding domain 135 192 - -
Spst6g00059 442 Gene3D - 131 183 - -
Spst6g00059 442 CDD SANT 135 178 IPR001005 -
Spst6g00059 442 MobiDBLite consensus disorder prediction 228 242 - -
Spst6g00059 442 MobiDBLite consensus disorder prediction 228 247 - -
Spst6g00059 442 Gene3D - 186 244 - -
Spst6g00059 442 SUPERFAMILY Homeodomain-like 129 225 IPR009057 -
Spst6g00059 442 ProSiteProfiles Myb-like domain profile. 179 229 IPR001005 -
Spst6g00059 442 SMART sant 131 180 IPR001005 -
Spst6g00059 442 SMART sant 183 231 IPR001005 -
Spst6g00059 442 CDD SANT 187 229 IPR001005 -
Spst6g00059 442 FunFam Transcriptional activator Myb isoform A 131 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00059 Spst-Chr6 811518 813655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00059 26 438 MYB Transcription Factor Family AT5G11050 36.364 9.99e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g00059 Myb_DNA-bind_6 1.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00059 K09422 - gmx:100786295 473.011